Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17510 315 / 1e-107 unknown protein AT3G03460 233 / 9e-76 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024979 [exp] 416 / 2e-149 AT5G17510 355 / 3e-123 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042800 [exp] 360 / 1e-124 AT5G17510 309 / 2e-102 unknown protein Potri.013G076800 [exp] 353 / 5e-123 AT5G17510 310 / 3e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024530 pacid=23169585 polypeptide=Lus10024530 locus=Lus10024530.g ID=Lus10024530.BGIv1.0 annot-version=v1.0 ATGGAGCTGCAAATGGCGTATCAAGATGCGTGGCGGGTCTGCCACCCTGATTATAAGCGCCCATTCACCTCTCTTGAAGATGCCTGCGAGAGGTTACTTC CTTACCATGTAGTTGCAGACTATGAAGCAGAGGAGGATGACAGAATCCTTGATTCTGATTCAACAGGGACAATGCCATCTCGATCTCAGCAGTGGGACTA TAACATTGCCGCGAAGGTTGCAGAATTCACTGGCACATTTGAGAAACAGGCAATGGCTTTCAACATAATAACTCGCAAACGAGCAGTGGGGGAATTTCGT TCCGAAGAGCGGCTGATGATTGAACAGGCACTTCTCCAGGAAGAGAAAAGAATGCTGCTGGAGGCGAAAGCAGAAATGGAAGCAAGGGAGAAAGCCAACC GGGAGGCTCAGCTAAGGATGGCAGCTATGGCCCAGGCTGAACTAGCTCGAGCAGAGTCTCATGCACATGCAGAAATGATGGCTCGCGGCCCGATAAGGCC AAACGCTCTTGGGGGGTCACAAGGTAGCGTCTCAATGAGTCACGATATGGGAGAGCAACAACACAGTGTGAACCCTGATGAGATGATGAACGGGTGGGGT AACAACTTGCAACGAGATGACAAGGAGCCATCAGAAGATTTCTTGAATGACGAAGAGAATGAGAATGGAGATACTGCCAGCCAAGGCGATTGGCGAGAAG TTGGAGAGTTCGACCTCAATTCTAGATAA
AA sequence Show only first row Show all	>Lus10024530 pacid=23169585 polypeptide=Lus10024530 locus=Lus10024530.g ID=Lus10024530.BGIv1.0 annot-version=v1.0 MELQMAYQDAWRVCHPDYKRPFTSLEDACERLLPYHVVADYEAEEDDRILDSDSTGTMPSRSQQWDYNIAAKVAEFTGTFEKQAMAFNIITRKRAVGEFR SEERLMIEQALLQEEKRMLLEAKAEMEAREKANREAQLRMAAMAQAELARAESHAHAEMMARGPIRPNALGGSQGSVSMSHDMGEQQHSVNPDEMMNGWG NNLQRDDKEPSEDFLNDEENENGDTASQGDWREVGEFDLNSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17510			unknown protein		Lus10024530 [exp]	0	1
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10003126 [exp]	10.1	0.7942
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10033922 [exp]	14.3	0.7734
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10005019 [exp]	23.2	0.7277
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Lus10043243 [exp]	30.1	0.7647
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024499 [exp]	30.6	0.7533
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	36.3	0.7574
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	54.4	0.7100
AT1G50660			unknown protein		Lus10032637 [exp]	66.6	0.7404
AT1G73940			unknown protein		Lus10010150 [exp]	72.7	0.7242
AT4G08280			Thioredoxin superfamily protei...		Lus10003739 [exp]	74.1	0.7038

Compare expression of checked genes

Lus10024530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.