Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64980 440 / 3e-158 Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005005 [exp] 248 / 4e-84 AT1G64980 218 / 6e-73 Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117500 [exp] 442 / 2e-159 AT1G64980 450 / 2e-162 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.019G042500 [exp] 440 / 3e-158 AT1G64980 447 / 2e-161 Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024531 pacid=23169600 polypeptide=Lus10024531 locus=Lus10024531.g ID=Lus10024531.BGIv1.0 annot-version=v1.0 ATGACCACCACCACAGACACGGTGTGGACGACCATGGCCAACGGCGGTGAGGTTCAAGCTACCGCCAATGGAGGAGCGAATGAGGGCAGCAAGCTTCTCA AGATCTTTGTCGGTTACGATCCGCGCGAAGATCTGGCGTACGAGGTGTGCCGACATTCCATCCTGAAGAGATCCACAATCCCGGTAGAGATTCATCCGAT TGTCCAGTCCGATCTCCGCAAGGATGGCTTGTACTGGAGGGAGCGAGGCAAGCTGGAGAGCACCGAATTCTCTTTCTCCCGTTTCCTCACCCCGCACTTG GCCAATTTCAATGGCTGGGCAATGTTTGTGGATTGCGATTTTCTTTACTTGGCCGATATTAAGGAGCTCCGAGATCTGGTTGACGACAAGTACGCCATTA TGTGTGTTCACCATGACTATACCCCAAAGGAAACCACAAAGATGGATGGTGCGGTTCAGACGGTGTACCCAAGGAAGAATTGGTCTTCGATGGTGCTGTA CAACTGTGGGCATCCAAAGAACAAGGTGTTAACCCCTGAGGTTGTGAATGCACAGACTGGTGCTTATCTGCACAGGTTCCAGTGGCTAGAAGATGATGAA ATTGGTGAAATCCCGTTTAATTGGAACTTCCTGGAGGGTCATAACAAGGTTGTGGAAGGTGATTCCTCCACCCTCCCTAAAGCTATACATTATACCAGGG GAGGGCCGTGGTTTGATGCGTGGAAGAACTGCGAGTTTGCAGACCTATGGTTGGATGAGATGGAGGACTACATGAAGGAGACGAAGAAACCAAATGGGAA CGAGTAG
AA sequence Show only first row Show all	>Lus10024531 pacid=23169600 polypeptide=Lus10024531 locus=Lus10024531.g ID=Lus10024531.BGIv1.0 annot-version=v1.0 MTTTTDTVWTTMANGGEVQATANGGANEGSKLLKIFVGYDPREDLAYEVCRHSILKRSTIPVEIHPIVQSDLRKDGLYWRERGKLESTEFSFSRFLTPHL ANFNGWAMFVDCDFLYLADIKELRDLVDDKYAIMCVHHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKVLTPEVVNAQTGAYLHRFQWLEDDE IGEIPFNWNFLEGHNKVVEGDSSTLPKAIHYTRGGPWFDAWKNCEFADLWLDEMEDYMKETKKPNGNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10024531 [exp]	0	1
AT3G12110		ACT11	actin-11 (.1)		Lus10021057 [exp]	2.4	0.9075
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	2.4	0.9153
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	3.2	0.9107
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021293 [exp]	3.2	0.8852
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	4.9	0.9042
AT3G12110		ACT11	actin-11 (.1)		Lus10004169 [exp]	4.9	0.8805
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	7.5	0.8766
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	8.5	0.8672
AT3G52500			Eukaryotic aspartyl protease f...		Lus10016967 [exp]	9.4	0.8718
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037521 [exp]	10.5	0.8621

Compare expression of checked genes

Lus10024531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.