Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39220 87 / 2e-22 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 84 / 3e-21 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 81 / 6e-20 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 68 / 1e-15 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041402 [exp] 99 / 1e-26 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036526 [exp] 97 / 8e-26 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10040394 [exp] 92 / 8e-24 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 85 / 2e-21 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10022040 [exp] 71 / 1e-16 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10038349 [exp] 68 / 2e-15 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10038350 [exp] 56 / 3e-11 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221700 [exp] 91 / 8e-24 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.008G040500 [exp] 90 / 2e-23 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.012G123900 [exp] 73 / 2e-17 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 70 / 3e-16 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.002G052600 [exp] 69 / 1e-15 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.005G210100 [exp] 68 / 1e-15 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024533 pacid=23169590 polypeptide=Lus10024533 locus=Lus10024533.g ID=Lus10024533.BGIv1.0 annot-version=v1.0 ATGAAAGAGACGTTCAAGAAATTAACACTGAAAGATACAGTGAAACCGATTTTGATCCCTTGCTACGACCTCTCCAGCATGGCGTCGTTTCTCTTCTCTC GTGCCGATGCTTTAGAAATCGACAGCTTCGATTTCCGGCTATGGGAGGTTTAG
AA sequence Show only first row Show all	>Lus10024533 pacid=23169590 polypeptide=Lus10024533 locus=Lus10024533.g ID=Lus10024533.BGIv1.0 annot-version=v1.0 MKETFKKLTLKDTVKPILIPCYDLSSMASFLFSRADALEIDSFDFRLWEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	0	1
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	1.0	1.0000
					Lus10038594 [exp]	1.4	1.0000
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Lus10040467 [exp]	7.3	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	8.5	1.0000
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10018690 [exp]	8.6	0.9923
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	8.7	1.0000
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	9.1	0.9843
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	9.5	1.0000
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10035583 [exp]	9.8	0.9696
AT3G58780	MADS	AGL1, SHP1	SHATTERPROOF 1, AGAMOUS-like 1...		Lus10029275 [exp]	10.1	0.9940

Compare expression of checked genes

Lus10024533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.