Plant FIBer expression Database

Lus10024534 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31150 91 / 3e-22 endonuclease V family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000685
[exp]
125 / 4e-34 AT4G31150 264 / 4e-86 endonuclease V family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G001000
[exp]
95 / 1e-23 AT4G31150 308 / 2e-105 endonuclease V family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0219 RNase_H PF04493 Endonuclease_5 Endonuclease V
Representative CDS sequence
>Lus10024534 pacid=23169582 polypeptide=Lus10024534 locus=Lus10024534.g ID=Lus10024534.BGIv1.0 annot-version=v1.0
ATGCATATTGATACTACTCCCGTTGAGGGCTTGGTTTTACCGGAAGGACGTTTAGCTGACGGCATGGAGAAAATGCTCATCACAAATAAAAAACGACCTC
GTTCCAGAGATTTGGAGGCGGTGGATTCTCCAGTTGCTAAGCGTCTCAGTGGTGGATTAGGTGTTGCAATTTCATTTGATTGTGAGGATTTTCTTGACAA
CGAGGCACCAATATTTTTGCAGCTACTTGAGAAGATGAAGAAGAGTGACAGTAGTTTATACCCTCAGGCAATGAGATCATCTGGTGGTGCAATGAAGCCC
ATCTTCATCTCAGCGGGGCATCGCATATCCCTGGACACTGCAATCAACATTGTCAAAATAACTTGCAAGTACCGTGTTCCAGAGCCTGTCCGTCAGGCTG
ATATAAGATCGAGGGAGCACCTAAAAAAGCATCAGACTGGAGGCGCAGGAAAATGCAGTTGCGTGAACTTGGTAGGTGCATCATTTGTTACGTTTTTCTT
CCTTTTTATTTATGTTAAGGTAAGCCTTCCGCCAGCTGCCTTCAATGTTGACTTCTCTTTCCCTCACGCATTACTTACCCAATAG
AA sequence
>Lus10024534 pacid=23169582 polypeptide=Lus10024534 locus=Lus10024534.g ID=Lus10024534.BGIv1.0 annot-version=v1.0
MHIDTTPVEGLVLPEGRLADGMEKMLITNKKRPRSRDLEAVDSPVAKRLSGGLGVAISFDCEDFLDNEAPIFLQLLEKMKKSDSSLYPQAMRSSGGAMKP
IFISAGHRISLDTAINIVKITCKYRVPEPVRQADIRSREHLKKHQTGGAGKCSCVNLVGASFVTFFFLFIYVKVSLPPAAFNVDFSFPHALLTQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G31150 endonuclease V family protein ... Lus10024534
[exp]
0 1
AT1G17350 NADH:ubiquinone oxidoreductase... Lus10027384
[exp]
3.5 0.8960
Lus10027225
[exp]
4.0 0.8471
Lus10014678
[exp]
4.4 0.9051
AT5G62980 FOLB2 Dihydroneopterin aldolase (.1) Lus10021252
[exp]
5.5 0.8694
AT1G07745 SSN1, ATRAD51D,... SUPPRESOR OF SNI1, homolog of ... Lus10005437
[exp]
6.2 0.8913
AT4G35785 RNA-binding (RRM/RBD/RNP motif... Lus10041854
[exp]
10.2 0.8674
Lus10042562
[exp]
11.3 0.8674
AT1G19100 Histidine kinase-, DNA gyrase ... Lus10039959
[exp]
11.7 0.8868
AT2G46090 Diacylglycerol kinase family p... Lus10036388
[exp]
12.0 0.8525
AT1G11330 S-locus lectin protein kinase ... Lus10015422
[exp]
13.4 0.8757

Lus10024534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.