Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31140 617 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 585 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 489 / 7e-170 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 459 / 2e-158 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 459 / 2e-158 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 447 / 1e-153 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 444 / 2e-152 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 443 / 5e-152 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 440 / 8e-151 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 439 / 1e-150 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040579 [exp] 593 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 592 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 506 / 2e-176 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 504 / 7e-176 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 464 / 3e-160 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 461 / 3e-159 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 457 / 1e-157 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039095 [exp] 454 / 1e-156 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10006811 [exp] 449 / 3e-154 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280700 [exp] 671 / 0 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 657 / 0 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 594 / 0 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 585 / 0 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 542 / 0 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 474 / 1e-164 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 470 / 8e-163 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 466 / 5e-161 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 462 / 7e-160 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G002100 [exp] 448 / 3e-154 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10024535 pacid=23169594 polypeptide=Lus10024535 locus=Lus10024535.g ID=Lus10024535.BGIv1.0 annot-version=v1.0 ATGGGGTGGATGATGATGAGGGCATACGGTGGTGCTGTGGTGGTGGTGGTGGCTGTGATGGCAACGTTGGTTGATGGATTTGGAGTGAATTGGGGGACAC AGGCAACTCACCCTTTAGCACCTTCGACTGTGGTTAGGATGATGAAAGACAACGGTATTCAAAAGGTGAAGCTGTTTGATGCAAACACATCTGCCTTGAA CGCACTAAGAGGCTCTGGTATTCAAGTCATGGTCGGGATTCCCAATGATATGTTGTTGATTCTCTCTCAGAGTTCTGATGCTGCTGACAAATGGGTTGCC AAGAACCTCTCTTCCCATCTCTCCCATGGCGTCGACATCAGGTATGTAGCCGTTGGGAATGAAGCATTTCTGAAAGCACTGAATGGTACTTACATGGGAT CAACACTTCCAGCTCTTGAAAAAATCCAGTCAGCCATATCAAAAGCTGGATTAAGCAACCGAGTCAAAGTCTCAACTCCTCTCAATGCAGATGTTTACGA GAGTGCATCGAACCGGCCTTCTGATGGAGATTTTCGAGCAGACATACACGGCCTCATGTTGTCAATCGTCAAGTTTCTGAGTGACAATGGAGCTCCATTC ATAGTCAACATCTACCCATTCATAAGCCTATACAAGGACCCAAACTTCCCAGTTGGATTCGCGTTCTTTGACAACAGCAACACTAGTTCCTCCTCCTCTG CTCCTATTGATGATGGAGGAATAACATACACCAATGTCTTTGATGCAAACCACGACACCCTTGTTCATGCCTTGCAGAAAAACGGCTATGGAAACTTGTC CATAGTCGTTGGAGAGATAGGGTGGCCTACAGATGGAGACAGGAGTGCAAACCTTAACTATGCTCAACAGTTCAACCAAGGGTTAATTACCCGTGTCAAC TCCGGCCAGGGGACTCCAATGAGGCCAGGACCTGTGGATGCCTATCTCTTTAGTCTAATAGATGAAGATGCCAAGAGCGTAGAGCCAGGAAACTTTGAGC GCCACTGGGGATTGTTTTACTACGACGGACAGCCAAAGTATGAACTTAGGCTGACGACAGCTAATTCTAATAATAATAATGCTGGTCTAGTACCAGCTAA AGATGTGGAGTATCTTCCCAGGAGGTGGTGTGTAATGTCCCCAGATGCAAGCCTGGATAACCCTGATGTTGGACCAAGTGTCAGCTACGCTTGTGCTAAT GCAGACTGCACAAGTCTGGGTTACGGGACCTCATGTTCAAATCTGGACCAGAAGCTGAACATATCGTATGCATTCAATGATTACTACCAGCAGAATGACC AGCAGGAAATCGCCTGCAAGTTCCATAACCTTTCAATTGTGACAAGTCAGGACCCGTCTGTTGGACAATGTAGGTTCCGGGTAATGATACAAACAGAGCT GGGAACTTGGTTATCTGCCTCAGCTTCCAGTGGGTCAGCACTGCAGTTGATGAACAACACTCTAGGGTTTGCAATATATGTGTTTGTTGGGTTAGTGCTC ATGTTTCTGTGA
AA sequence Show only first row Show all	>Lus10024535 pacid=23169594 polypeptide=Lus10024535 locus=Lus10024535.g ID=Lus10024535.BGIv1.0 annot-version=v1.0 MGWMMMRAYGGAVVVVVAVMATLVDGFGVNWGTQATHPLAPSTVVRMMKDNGIQKVKLFDANTSALNALRGSGIQVMVGIPNDMLLILSQSSDAADKWVA KNLSSHLSHGVDIRYVAVGNEAFLKALNGTYMGSTLPALEKIQSAISKAGLSNRVKVSTPLNADVYESASNRPSDGDFRADIHGLMLSIVKFLSDNGAPF IVNIYPFISLYKDPNFPVGFAFFDNSNTSSSSSAPIDDGGITYTNVFDANHDTLVHALQKNGYGNLSIVVGEIGWPTDGDRSANLNYAQQFNQGLITRVN SGQGTPMRPGPVDAYLFSLIDEDAKSVEPGNFERHWGLFYYDGQPKYELRLTTANSNNNNAGLVPAKDVEYLPRRWCVMSPDASLDNPDVGPSVSYACAN ADCTSLGYGTSCSNLDQKLNISYAFNDYYQQNDQQEIACKFHNLSIVTSQDPSVGQCRFRVMIQTELGTWLSASASSGSALQLMNNTLGFAIYVFVGLVL MFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	0	1
AT5G01880			RING/U-box superfamily protein...		Lus10025228 [exp]	1.0	0.8627
AT3G54570			Plant calmodulin-binding prote...		Lus10039544 [exp]	2.8	0.8036
AT5G47740			Adenine nucleotide alpha hydro...		Lus10043338 [exp]	5.3	0.8056
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	6.2	0.8448
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	9.8	0.8145
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	10.1	0.8279
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	13.0	0.8099
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	13.1	0.7181
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	13.6	0.8136
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	14.7	0.7966

Compare expression of checked genes

Lus10024535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.