Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G071800 [exp] 122 / 8e-33 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024538 pacid=23169583 polypeptide=Lus10024538 locus=Lus10024538.g ID=Lus10024538.BGIv1.0 annot-version=v1.0 ATGGAGCATGCTGAGTCTGGTCTTCGATCTTCTTCGAGGCGTGACTTCCCTTCATCTTCACATACCAACCGGTCTCGGGATAGATATCGGGACAGGGAAA ATGGAAGATCAGCTAACGATGGGGGTAACAGAACAAGTGGAGGTGAACATCATGGTAATACCAGCTCTTCAATGGCTGTCCCGACGGTTGTGTTGTCCGG TGGGTCGCGGGGATTCTCAGGGCAAACACCAACTATTATTCTTCAGTCACGTGAAAGGCAAGATGATTATGGAAGTAGTTACGATGAGAATTTGGATGGA AGCGTAGGTGACACTGGTAGCATAGGGGATCCAGAACTGATGTCTGCATTTGATGTACCTCTTGCTGGGCAACGACGGGGTGGTAACAAATTGAAGCAGC AGTCGGTGGAGCGAAAAGAAAGGGAGGGGAGGCGTGAAGGTAAGTGGGAGAGAAAACATTAG
AA sequence Show only first row Show all	>Lus10024538 pacid=23169583 polypeptide=Lus10024538 locus=Lus10024538.g ID=Lus10024538.BGIv1.0 annot-version=v1.0 MEHAESGLRSSSRRDFPSSSHTNRSRDRYRDRENGRSANDGGNRTSGGEHHGNTSSSMAVPTVVLSGGSRGFSGQTPTIILQSRERQDDYGSSYDENLDG SVGDTGSIGDPELMSAFDVPLAGQRRGGNKLKQQSVERKEREGRREGKWERKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024538 [exp]	0	1
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	1.4	0.9083
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10027444 [exp]	3.6	0.8282
AT3G51940			unknown protein		Lus10039572 [exp]	4.5	0.8693
AT3G22660			rRNA processing protein-relate...		Lus10036936 [exp]	5.3	0.8466
AT3G52230			unknown protein		Lus10038643 [exp]	5.5	0.8613
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	6.5	0.9026
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	7.3	0.8586
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	8.1	0.8711
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10014319 [exp]	8.5	0.8008
					Lus10003566 [exp]	8.5	0.8218

Compare expression of checked genes

Lus10024538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.