Plant FIBer expression Database

Lus10024539 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G071800
[exp]
148 / 7e-40 ND /
PFAM info
Representative CDS sequence
>Lus10024539 pacid=23169589 polypeptide=Lus10024539 locus=Lus10024539.g ID=Lus10024539.BGIv1.0 annot-version=v1.0
ATGGCGGCCCACGATCAGGTTTTTGCAAATCTGTCTTCTGTTCAGTCGTATTTTGATGTCTTCTCTGACAAAATCAAGCAGGAGGAGATGGAACTGGAGG
AAGCTGAACTAGAACTTGACATTGTTGAAAATGCATTAGCAAAAAGAGAATCTGCAGAAGATAAAAATCAAGAGAGGAATGTTCCTTTAATTGTCGATTC
TGCAGAAGGCAAAGGCCGTCTACAGCAGATCAAGGATCACATCCGTTTATTAGATAGATCCAAACTCCAAGAAGATATTGTAGCGCACAGGCAAAGGAAA
CTAACTTTGAGGCGAGCCCGTCAAAAGTATCTTGAAGAAGCAGCTTTACGGGAACAGGAACTTCTCCAGGAGCTTGACAGTGAAAGGACAACTGAAGCAG
AAAAGGAGATTGAGAGACAAAGGTTGCTTGAAGTCGAGCGTGCAAAAACTAGGGAGCTTCGTTATAATCTGGAAATTGAGAAGGAGAGACGAGCACAATC
GGCTCCGCCTTCCCCTCCGCTGACTGCTCCGCTGGCATCCTCTCCTCCTTCTTTTCCTCCACCCACACCTCCGACCACTTCCACGTCATCACTCCCGATC
CCATCTCTCCTCACAAGAACTCCCACCGCCTTGCCCTTCGACACTCTCCTCGTCTCGATGTCTCCCACTCCCTTCCTTCCTTCGCATCTCGTCTCTCTGA
TACCATATAATCAGCCATCTCCTCCACCCCAATCCCCTGGTGACTCCTCCCCTAGGTTTACCAAATGCTTCGGCACAATTTGGACTGGCAAGGAGAGCCG
AGGATGCGCTCGCCGTGACGATTCCGCGACGCTCCGCTTTAATCAGTCCGCGTCCAACTAA
AA sequence
>Lus10024539 pacid=23169589 polypeptide=Lus10024539 locus=Lus10024539.g ID=Lus10024539.BGIv1.0 annot-version=v1.0
MAAHDQVFANLSSVQSYFDVFSDKIKQEEMELEEAELELDIVENALAKRESAEDKNQERNVPLIVDSAEGKGRLQQIKDHIRLLDRSKLQEDIVAHRQRK
LTLRRARQKYLEEAALREQELLQELDSERTTEAEKEIERQRLLEVERAKTRELRYNLEIEKERRAQSAPPSPPLTAPLASSPPSFPPPTPPTTSTSSLPI
PSLLTRTPTALPFDTLLVSMSPTPFLPSHLVSLIPYNQPSPPPQSPGDSSPRFTKCFGTIWTGKESRGCARRDDSATLRFNQSASN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10024539
[exp]
0 1
AT1G53530 Peptidase S24/S26A/S26B/S26C f... Lus10015272
[exp]
3.9 0.8189
AT2G26280 CID7 CTC-interacting domain 7 (.1) Lus10009796
[exp]
7.9 0.8290
AT3G09360 Cyclin/Brf1-like TBP-binding p... Lus10038957
[exp]
11.0 0.8274
AT1G20696 NFD3, NFD03, HM... high mobility group B3 (.1.2.3... Lus10012250
[exp]
11.0 0.8226
AT2G25760 Protein kinase family protein ... Lus10037565
[exp]
11.1 0.7786
AT4G36690 ATU2AF65A U2 snRNP auxilliary factor, la... Lus10024026
[exp]
11.5 0.8224
AT5G46560 unknown protein Lus10011046
[exp]
13.7 0.8177
AT3G21480 BRCT domain-containing DNA rep... Lus10012790
[exp]
15.7 0.7679
AT4G20310 Peptidase M50 family protein (... Lus10001219
[exp]
21.2 0.7848
AT1G07480 Transcription factor IIA, alph... Lus10001563
[exp]
21.4 0.8173

Lus10024539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.