Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65020 405 / 1e-142 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079201 [exp] 456 / 9e-163 AT1G65020 435 / 2e-154 unknown protein Potri.013G079101 [exp] 439 / 5e-156 AT1G65020 390 / 8e-137 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF08378 [flax] [poplar] NERD Nuclease-related domain
Representative CDS sequence Show only first row Show all	>Lus10024543 pacid=23169581 polypeptide=Lus10024543 locus=Lus10024543.g ID=Lus10024543.BGIv1.0 annot-version=v1.0 ATGTGGGTTGAGATCCTTTGCGGACTGATCCTTTACAAGCTCGTCCGCGTCTTCTTTGGCTCTGGCGATGATGTTGAGACCTCCGACACTAGCGCGGTTT TCCTCGTTGCCAATCGACTTGAAAAGCTGTATGGAGGGAAGGTTTATGTAGGGCTTCGTATACCAGATGCTGATACAGGTTCACGTCAGAGTATTGATGC AGTCCTCATTACCAAAGGGGAGGCAGTGCTGATTTCTGTCAAGAACTTAGCCGGGTTTGTCTCAGTTAATGATGATGGTAGCTGGATATGTGAGGGTGAC AGCCGACACAAGACTGAACATCATCCTAATCCTGTAGAAGAGGTCAAGAAGCAAGCTTCTATTTTGGAATCATACCTTGAACAAAGGGGAGTTTCTCTTC CAGAAGGATATCTGTCATACAAAGTTATACTTCCAAATCCAAAGTTCCGCACCATCTATGCTGACAAATTCCCATCTGTAGTGATCACATATGATCAGTG GAGAGCGATGAAGCCAGAATCGAAAAGTTATTCAATAAGTTGGTTTAAGGGAGCAGTTTGTGGCGCAAAGAAGGAGAATCAGGAATCCATTAACCAGAAA CTTAATTTCATTCTCAATTCAGCTCCAATGTGGGATAGGCTGGAGCTGAAAGGTAACAAGTATGTTCTAGGAGAATTCCTTGAATTTAAAGGGAAGACAG AAGATAAAATGGCTTTGAAGCATATCGAAAGATCAAAAGTCAGTCAGGTCGTGGTTCAAAAGACAAGTATGCTTGGAGTAGCTCCTTCAAGGCTCCAAGT TTTGTACTCGGCTCGTGATTTTCGAAGTGAAGGCGCCACATCATCGGAGTGGAATGAAGAAACCGTTAGGTCAAGTACTGAAGTGGTGTTTCAGCCTCAG AACTCGGCCAAAGTCCGTAAATACAAGTTTTCTTCGGTCATTTCTATGTCACTCAGTGCATAA
AA sequence Show only first row Show all	>Lus10024543 pacid=23169581 polypeptide=Lus10024543 locus=Lus10024543.g ID=Lus10024543.BGIv1.0 annot-version=v1.0 MWVEILCGLILYKLVRVFFGSGDDVETSDTSAVFLVANRLEKLYGGKVYVGLRIPDADTGSRQSIDAVLITKGEAVLISVKNLAGFVSVNDDGSWICEGD SRHKTEHHPNPVEEVKKQASILESYLEQRGVSLPEGYLSYKVILPNPKFRTIYADKFPSVVITYDQWRAMKPESKSYSISWFKGAVCGAKKENQESINQK LNFILNSAPMWDRLELKGNKYVLGEFLEFKGKTEDKMALKHIERSKVSQVVVQKTSMLGVAPSRLQVLYSARDFRSEGATSSEWNEETVRSSTEVVFQPQ NSAKVRKYKFSSVISMSLSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65020			unknown protein		Lus10024543 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	2.8	0.9046
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	4.5	0.9085
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	5.3	0.8975
AT5G35080			unknown protein		Lus10039972 [exp]	5.5	0.8949
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	6.9	0.8828
AT5G03460			unknown protein		Lus10014419 [exp]	7.1	0.8956
AT1G31940			unknown protein		Lus10012117 [exp]	8.4	0.8949
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	13.9	0.8717
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10014186 [exp]	14.5	0.8631
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	15.2	0.8833

Compare expression of checked genes

Lus10024543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.