Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07020 659 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G43620 513 / 1e-175 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT5G24750 59 / 9e-09 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009556 [exp] 774 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 706 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011882 [exp] 674 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020381 [exp] 630 / 0 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 588 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018878 [exp] 517 / 1e-176 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 515 / 1e-175 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10011883 [exp] 509 / 5e-175 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 220 / 1e-66 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178300 [exp] 672 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G238600 [exp] 668 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G067100 [exp] 530 / 0 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 525 / 7e-180 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.003G021100 [exp] 62 / 5e-10 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [flax] [poplar] GT-B PF03033 [flax] [poplar] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024544 pacid=23169576 polypeptide=Lus10024544 locus=Lus10024544.g ID=Lus10024544.BGIv1.0 annot-version=v1.0 ATGGAGGAGCGTCCCCTTACGGACTCTCTCAATCACAATTCGATTTGGATTACTGAAGCCATTGCCACAGAGGATGCTGCTACTCCCTCTAATTTCCCTG CTCAGTTTGATCTTATTGGTTTCTTTTATACTTCTGTGCGCTGCTCATCTTGTCAACATCACTCCATCACAACTGTTCCTGGGAAACAAGATTCAGGTTC TCTTCTTCAGCAGCCACATGATGATAAATCGGGAGACTTTCAGACGTTAGATTCACTGGCTGCTCAACTATTTGATGAAAATGTCTCTATTCACAACAAG TTGAAATTGTTCGAACGACTCGCTACTATTAAAGAGGATGGAACTGTTCAGGTTGAAGTTCCTACGGATATAGAGCCACGTAGCCTTGAACCTGAATCAT TTATTTATTCTGAAGAAGCAGATGATGAGTCTGTTGATAAAGATTATATGAGGAATATACCTCCCCTGCAAATTGTAATGCTTATAGTTGGAACTAGAGG AGATGTGCAACCATTTATCGCCATTGGTATACGTTTACAGTTCATGCAGGAAGATGGTCACAGAGTTAGACTGGCCACACATGCAAATTTTAAAGATTTT GTGTTAGATGCTGGTCTCGAGTTTTATCCTCTAGGCGGAGACGCCAAAGTTCTTGCTGCGTATATGGTAAAGAATAAAGGAATCCTTCCAGCTGGACCAT CTGAAATACCGTTACAGAGGCAGCAGCTGAGGGAAATTATATTCTCTTTGTGTGCTGCATGCATAGATCCAGACCCTGAAACCAAAGTTCGATTCAGAGC AGAAGCTATAATTGCCAATCCCCCATCATATGGTCACTGGCATGTCGCGGAGGCAATGAAAATACCGTTGCACATGTTCTTTACAATTCCCTGGACGCCA ACCTGTGAATTCCCACATCCTTTCACTCGTGTGAAGCAACCAGCTGCATACAGATTATCATATCACATAATCGACACACTTCTTTGGCTTGGGGCACGGG GCATGATAAATGAGTTTAGAAAGAAGCATATGAAGCTAAGGCCAGTTACATATTTAAGGGGATCCCAGAGCTCACGCATGGATCCGCCTTTTGCGTATGT ATGGAGCCCTCATCTTGTTCCCAAACCAAAAGACTGGGGGCCTAAAGAGGATGTCGTTGGCTTTTGCTTTCTTGATCTTGCAACCAAGTACGAGCCTCCT ACTGCCCTCTTGGATTGGCTAGCAAGTGGTGATGCGCCCATCTACATCGGTTTCGGCAGCCTTCCACTTGAAGAACCGGAAAAACTGACTGAGGAGATCA TCAAGGCCCTGGAATTAACTGGTCAAAGGGGTGTCATAAACGAAGGCTGGGGTCGGCTGGGGAATCTGTCGAAACCCAAGAAGTTTGTGTATTCACTGGA TAGTTGCCCACATGACTGGTTGTTCTTAAAATGCAAGGCTGTGGTGCACCATGGAGGTGCTGGAACAACAGCTGCTGGTCTCAAAGCTGCGTGTCCTACA ACAGTTGTTCCTTTCTTCGGAGACCAATATTTTTGGGGGGGGCAGGTCCATGCCAGAGGAGTAGGTCCGGCACCTATTCCCATCGACGAATTCTCGGTAG AAAAGCTCGTTTCTGCAATTGAGTACATGCTGGATCCCAGGGTGAAACTGCGTGCAGTTGAATTGGCAAAGGCAATGGAGAAGGAAGATGGAGTTACAGG TGCAGTTAAAGCCTTCTATAAACATTTTCCGGCTACAAAGTTAGCGCCTGTACCTGAATCAGACCTCCATGTGACCGAGACTAACAAGACATCTCATTCC AGATTCTCAGTCCGTAATTGGTGTAAAGACCCAGATATCTCAGAGAATCTTAGTTTCAGTAGGGATCTTGGTGAACTGAGCTGCTCTCCAACGGCTAGGT ATTCTGCTCATATAATCTTGTTCGACACTCGATTCAATTTCAAATCATTCTAG
AA sequence Show only first row Show all	>Lus10024544 pacid=23169576 polypeptide=Lus10024544 locus=Lus10024544.g ID=Lus10024544.BGIv1.0 annot-version=v1.0 MEERPLTDSLNHNSIWITEAIATEDAATPSNFPAQFDLIGFFYTSVRCSSCQHHSITTVPGKQDSGSLLQQPHDDKSGDFQTLDSLAAQLFDENVSIHNK LKLFERLATIKEDGTVQVEVPTDIEPRSLEPESFIYSEEADDESVDKDYMRNIPPLQIVMLIVGTRGDVQPFIAIGIRLQFMQEDGHRVRLATHANFKDF VLDAGLEFYPLGGDAKVLAAYMVKNKGILPAGPSEIPLQRQQLREIIFSLCAACIDPDPETKVRFRAEAIIANPPSYGHWHVAEAMKIPLHMFFTIPWTP TCEFPHPFTRVKQPAAYRLSYHIIDTLLWLGARGMINEFRKKHMKLRPVTYLRGSQSSRMDPPFAYVWSPHLVPKPKDWGPKEDVVGFCFLDLATKYEPP TALLDWLASGDAPIYIGFGSLPLEEPEKLTEEIIKALELTGQRGVINEGWGRLGNLSKPKKFVYSLDSCPHDWLFLKCKAVVHHGGAGTTAAGLKAACPT TVVPFFGDQYFWGGQVHARGVGPAPIPIDEFSVEKLVSAIEYMLDPRVKLRAVELAKAMEKEDGVTGAVKAFYKHFPATKLAPVPESDLHVTETNKTSHS RFSVRNWCKDPDISENLSFSRDLGELSCSPTARYSAHIILFDTRFNFKSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	0	1
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	1.7	0.9431
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	1.7	0.9478
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	2.0	0.9464
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	2.2	0.9387
AT5G54850			unknown protein		Lus10011150 [exp]	3.5	0.9382
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	3.5	0.9407
AT5G55060			unknown protein		Lus10021546 [exp]	3.7	0.9355
AT4G30310			FGGY family of carbohydrate ki...		Lus10006975 [exp]	5.0	0.9111
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	5.3	0.9179
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	8.4	0.9262

Compare expression of checked genes

Lus10024544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.