Plant FIBer expression Database

Lus10024545 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73820 315 / 5e-111 Ssu72-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005003
[exp]
144 / 4e-45 AT1G73820 119 / 1e-35 Ssu72-like family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G036600
[exp]
339 / 1e-120 AT1G73820 340 / 4e-121 Ssu72-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF04722 Ssu72 Ssu72-like protein
Representative CDS sequence
>Lus10024545 pacid=23169592 polypeptide=Lus10024545 locus=Lus10024545.g ID=Lus10024545.BGIv1.0 annot-version=v1.0
ATGGTGTGTTCCTCGAATCAGAATCGGAGCATGGAATCCCACGCACTGCTCAAGCGCCATGGCTTCGACGTCTCTTCCTATGGAACCGGTTCTCAGGTCA
AGCTCCCTGGACCTTCCATTCGAGAGCCCAATGTCTACGACTTCGGTACCCCTTATAAGCACATGTTCGAGGAACTCAGGCGCAAGGACCCTGAACTCTA
TAAACGTAATGGAATTCTGCCGATGCTTAAAAGGAATTTGTCTGTCAAATTGGCACCTCAACGTTGGCAAGAAAATGCTGCTGATGGCTCATTTGATGTG
GTGGTCACCTTTGAAGAAAAAGTCTTTGATATGGTTGTAGAAGATCTCCATAATAGAGATCATGTTCGTCTGAAGACCGTTCTAGTGATCAACCTTGAAG
TGAAAGACAACCATGAGGAGGCGGCCGTGGGAGCTAGACTCACATTAGACCTTTGCCAAGCGATTGAAGAAGGAGCAGAAGCGTGGGAGGAGTCTGTTGA
TGAGATCATACCTGCATTCGAAGCAAAACACCGAAGGAAACTGTTATATAGCATCTTGTTCTATTGA
AA sequence
>Lus10024545 pacid=23169592 polypeptide=Lus10024545 locus=Lus10024545.g ID=Lus10024545.BGIv1.0 annot-version=v1.0
MVCSSNQNRSMESHALLKRHGFDVSSYGTGSQVKLPGPSIREPNVYDFGTPYKHMFEELRRKDPELYKRNGILPMLKRNLSVKLAPQRWQENAADGSFDV
VVTFEEKVFDMVVEDLHNRDHVRLKTVLVINLEVKDNHEEAAVGARLTLDLCQAIEEGAEAWEESVDEIIPAFEAKHRRKLLYSILFY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73820 Ssu72-like family protein (.1) Lus10024545
[exp]
0 1
AT2G45960 PIP1;2, ATHH2, ... TRANSMEMBRANE PROTEIN A, NAMED... Lus10014840
[exp]
3.5 0.8397
AT4G14723 EPFL4, CLL2 epidermal patterning factor li... Lus10041186
[exp]
3.5 0.8575
AT2G28900 OEP16, ATOEP16-... outer envelope protein 16, OUT... Lus10040810
[exp]
3.9 0.8493
AT1G62760 Plant invertase/pectin methyle... Lus10031132
[exp]
4.0 0.8603
AT5G45670 GDSL-like Lipase/Acylhydrolase... Lus10002773
[exp]
7.5 0.8243
AT5G52420 unknown protein Lus10039249
[exp]
8.0 0.8101
AT1G72970 HTH, EDA17 HOTHEAD, embryo sac developmen... Lus10015623
[exp]
17.5 0.8082
AT1G11790 AtADT1, ADT1 Arabidopsis thaliana arogenate... Lus10015561
[exp]
26.2 0.8132
AT5G59770 Protein-tyrosine phosphatase-l... Lus10040862
[exp]
27.5 0.8025
AT4G23820 Pectin lyase-like superfamily ... Lus10032374
[exp]
27.7 0.7874

Lus10024545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.