Plant FIBer expression Database

Lus10024546 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43690 703 / 0 ubiquitin interaction motif-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005002
[exp]
1076 / 0 AT1G43690 772 / 0.0 ubiquitin interaction motif-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G191300
[exp]
828 / 0 AT1G43690 707 / 0.0 ubiquitin interaction motif-containing protein (.1)
Potri.002G069100
[exp]
823 / 0 AT1G43690 741 / 0.0 ubiquitin interaction motif-containing protein (.1)
PFAM info
Representative CDS sequence
>Lus10024546 pacid=23169597 polypeptide=Lus10024546 locus=Lus10024546.g ID=Lus10024546.BGIv1.0 annot-version=v1.0
ATGGCGGATCAAGAAGAAGATGACCTCAGAATGGCTCTTAGGTTGAGCATGCAGAACCCTTCAACACCAGAGCCGAAGCTGCAGAATTCTCCGCCGGAAC
CCAAGCGGAGCAAGCCGAGGGACACTGCTGCTGCTGCTGTTGCGGAGGGAGGGGCCTCGGTCTCTCCGGATGATTCGAGGAGACTGCAGAGAGAGCTGAT
GGCAGCTGCAGCTGAGAAGCGGATGCTCACTTCGCCCAAAATTGCGAAGCCGTCTTCTACTAGTCCAAGTGCTGCTACTCATAAAAGCCCTATTAAAAAG
CCTGATTCTTCTACAAATGAGAATGATGGTGGTATGAAAGATCATAAATTGGGGCGAGAATTGTCGGCAGAAGAGGCCAATCAATTGTTCTCTATGGTGT
TTGGGACAGGCGTTTCGAAGGACATTCTTGCTCAATGGTGCAATCAGGGTATAAGGTTTAGCTCCGATCCTGAAACATCTATGGGGCTGGTGCAGCATGA
AGGTGGGCCCTGCGGCGTCTTAGCAACAATACAAGCATTTGTTCTCAAATACATCCTTTTCTTTCCGCTTGAAGTAGGCCAAGTTGGGCCAAACATGCAC
CAAAATCATGGTTCCGAAAGACTGTCCAACACTAGATATGTGGCTTCAAACAATTTTTCTGCAGTTACGGAAGATGCTAGGGCAAGGGCCTTAGTCAAAA
GTATGAGTGAGATATTGTTTCTATGTGGAAGTGGTGATAGGGCTGTGATTGCCACGTTGAGTAACACAGATCATGGTACGGAAAGCTCCTCAAAATATGA
GGTTATTGCAAAAGCACTTGAAAGAGTTTCTATAGAATCAGCTGCTGATTTGCAAAAGGTTCTTAGAATTGACACAGTTAGTAAAGAAGCAAGTGCATTG
CAGAGGCTTCAGGATACAATTCCCATCTTCCAATCTCGCATGGGGACATTGCTCTTCCTTATTTCTGCACTGCTTTCTCGAGGATTGGAGAAAGTTCAAG
CGGACAGAGATGATCCCATTCTCCCACTGGTCACGGCACCTTTTGGGCATGCGTCCCAGGAAATAGTAAACTTATTACTCTGTGGTCAGGCAGTCGCTAA
TGTATTCGACGGTCGGATGGATTTGGGTGGTGGAATGTTTCTGAAAGGCATATCCAGCGGTGTTGAAGTTGGGTTTCTTACCCTGTTAGAATCTCTCAAT
TTCTGTAAGGTTGGTCAGCATCTAAAAACTCCAAAGTGGCCTATATGGGTAATTGGTAGCGAGTCCCATTACACAGTTCTATTTGCTCTGGACACCTCTG
TCCAAGAGGAAAATGAGTTGGAGGAGAGGGAGTCCCAAATTCGAAAAGCTTTTGATGCTCAAGATCAGAGTGGCGGTGGTGGGTTCATCAGCGTAGAAGG
TTTCCGTCAGGTCCTTAGGGATGTAAGCGTCAGACTACCGGCAGAGAAAGTTGATCATCTTTGCGGCACTGGGTTCATCGTGTGGAGTGAATTCTGGCAG
GTGATTCTCGATCTAGACAAGAGTTCAGGAGGTCTAAAGGATTCAAGTGGGTTGATGGGGAAGAAAGTGTTTGATCTTTACCATTTCAACGGCATTGCAA
AATCCGACTTAAATGCTAGCAATAATACATCATCCTCCGCTGGACCGGTCCAAAGACCTAGGCTGACAAAACTGAAGGTTTCAGTGCCACCAAGGTGGAC
CCCGGAGGAATTCATGACCGTGCCCTCTGCTTCTGCTTCTGCATCTGCATCTGGTAGTGGCGATTCTAAAGACACGACGGAAGTAAACAAGCCCGAGCCC
TGCCAGCATGCACCACTGGTCGACTGTGTTAGAACACGGTGGCCTCGTGCTAGCTGTAATTGGCTAGGGGATCCGCCCAGCATAGTCTGA
AA sequence
>Lus10024546 pacid=23169597 polypeptide=Lus10024546 locus=Lus10024546.g ID=Lus10024546.BGIv1.0 annot-version=v1.0
MADQEEDDLRMALRLSMQNPSTPEPKLQNSPPEPKRSKPRDTAAAAVAEGGASVSPDDSRRLQRELMAAAAEKRMLTSPKIAKPSSTSPSAATHKSPIKK
PDSSTNENDGGMKDHKLGRELSAEEANQLFSMVFGTGVSKDILAQWCNQGIRFSSDPETSMGLVQHEGGPCGVLATIQAFVLKYILFFPLEVGQVGPNMH
QNHGSERLSNTRYVASNNFSAVTEDARARALVKSMSEILFLCGSGDRAVIATLSNTDHGTESSSKYEVIAKALERVSIESAADLQKVLRIDTVSKEASAL
QRLQDTIPIFQSRMGTLLFLISALLSRGLEKVQADRDDPILPLVTAPFGHASQEIVNLLLCGQAVANVFDGRMDLGGGMFLKGISSGVEVGFLTLLESLN
FCKVGQHLKTPKWPIWVIGSESHYTVLFALDTSVQEENELEERESQIRKAFDAQDQSGGGGFISVEGFRQVLRDVSVRLPAEKVDHLCGTGFIVWSEFWQ
VILDLDKSSGGLKDSSGLMGKKVFDLYHFNGIAKSDLNASNNTSSSAGPVQRPRLTKLKVSVPPRWTPEEFMTVPSASASASASGSGDSKDTTEVNKPEP
CQHAPLVDCVRTRWPRASCNWLGDPPSIV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G43690 ubiquitin interaction motif-co... Lus10024546
[exp]
0 1
AT3G26370 O-fucosyltransferase family pr... Lus10006227
[exp]
2.2 0.9241
AT4G00110 GAE3 UDP-D-glucuronate 4-epimerase ... Lus10030281
[exp]
2.4 0.9185
AT3G25580 Thioredoxin superfamily protei... Lus10013889
[exp]
3.5 0.8891
AT1G74690 IQD31 IQ-domain 31 (.1) Lus10004263
[exp]
3.7 0.9018
AT4G02010 Protein kinase superfamily pro... Lus10037526
[exp]
3.9 0.9025
AT5G42350 Galactose oxidase/kelch repeat... Lus10013215
[exp]
4.0 0.9036
AT3G60030 SBP SPL12 squamosa promoter-binding prot... Lus10004523
[exp]
4.2 0.8952
AT1G13980 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBR... Lus10026627
[exp]
5.5 0.9069
AT2G40980 Protein kinase superfamily pro... Lus10035407
[exp]
6.3 0.8987
AT4G39920 TFCC, POR TUBULIN-FOLDING COFACTOR C, PO... Lus10006364
[exp]
7.2 0.8889

Lus10024546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.