Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024547 pacid=23169599 polypeptide=Lus10024547 locus=Lus10024547.g ID=Lus10024547.BGIv1.0 annot-version=v1.0 ATGGAAACTTTCGGACTCTCATCATGCGCTAGGATTTCAATCAAACTCGATGTGCCTCTTCCTTATGGCTGTTGGGCAAGTGATGATGTAGAAGCCGAGT GGGTAAATTACAAGTTCGAGAAACTTCCTTCATCTTTCTGCTATGATTGTGGAAGGGTCGGACATAACAACAACTCATGCGATTTTAAAGATGAATATGT AGCAAAATGCTACGGAGAACACACAAGATCCGGAATATACTCGTCGTATGCTCCAATGCCGGCGAGGTTTGTTAGAACCGAAACTGGAGGAAATGGAGAG GAATAA
AA sequence Show only first row Show all	>Lus10024547 pacid=23169599 polypeptide=Lus10024547 locus=Lus10024547.g ID=Lus10024547.BGIv1.0 annot-version=v1.0 METFGLSSCARISIKLDVPLPYGCWASDDVEAEWVNYKFEKLPSSFCYDCGRVGHNNNSCDFKDEYVAKCYGEHTRSGIYSSYAPMPARFVRTETGGNGE E

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024547 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10008202 [exp]	1.4	0.8691
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10002650 [exp]	7.7	0.6862
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	12.5	0.7177
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	14.1	0.7543
AT3G27210			unknown protein		Lus10035217 [exp]	15.4	0.7715
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	16.7	0.7292
					Lus10029450 [exp]	20.1	0.8081
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10017654 [exp]	29.2	0.7169
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	30.8	0.7225
AT5G18910			Protein kinase superfamily pro...		Lus10012776 [exp]	38.5	0.6385

Compare expression of checked genes

Lus10024547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.