Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24550 786 / 0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G60780 250 / 3e-78 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 245 / 3e-76 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 236 / 1e-72 Clathrin adaptor complexes medium subunit family protein (.1.2) AT1G56590 132 / 4e-34 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003537 [exp] 864 / 0 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10004626 [exp] 253 / 3e-79 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 246 / 2e-76 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 241 / 1e-74 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10030961 [exp] 238 / 2e-73 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10040086 [exp] 237 / 5e-73 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10018088 [exp] 198 / 8e-56 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10000107 [exp] 172 / 2e-49 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10031432 [exp] 133 / 2e-34 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105100 [exp] 815 / 0 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.002G105050 [exp] 306 / 8e-104 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.008G187600 [exp] 257 / 7e-81 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.010G044700 [exp] 249 / 8e-78 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 232 / 3e-71 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 229 / 4e-70 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.005G010600 [exp] 134 / 1e-34 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 134 / 2e-34 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10024548 pacid=23169596 polypeptide=Lus10024548 locus=Lus10024548.g ID=Lus10024548.BGIv1.0 annot-version=v1.0 ATGATCTCGCAGTTCTTCGTCCTCTCGCAGCGTGGCGATAATATCGTCTTCCGCGACTATCGCGGAGATGTGCAGAAGGGGAGTGCGGAAATATTTTTCA GGAAAGTTAAGTTCTGGAAAGATGACGGTGAAGAAGAAGCCCCTCCTGTCTTTAATGTCGATGGTGTAAACTACTTTCATGTGAAAGTTGTTGGACTCTT ATTCGTCGCAACAACTAGAGTCAATATGTCACCTTCACTAGTTTTGGAACTTCTACAACGGATCGCTCGTGTCATTAAAGATTACCTCGGGATTCTCAAT GAAGATTCTTTCCGAAAAAACTTTGTGCTAGTCTATGAGTTGCTTGATGAAGTCATTGATTTTGGTTATGTACAAACGACTTCCACGGAGGTTTTGAAGT CGTACGTCTTTAATGAACCTATAGTGATCGATGCTGTCCGTTTGCAACCTCCCAATCCTGCTTCCATTTTCATGCATGGGACCAAACGCATGCCAGGTAC AGCTGTGACAAAATCAGTGGTCGCAAATGAGCCTGGCGGTAGGAAGAGGGAAGAAATCTTTGTGGACATAATTGAGAAAATCAGTGTGACTTTCAGCTCC AGTGGGTATATCCTGACCTCTGAAATTGATGGAACAATTCAAATGAAGAGCTATCTTACTGGTAATCCCGAAATCCGTTTAGCTCTCAACGAGGACCTGA CAATTGGAACCAATGGAGGGAGATCAAACTATGGTAGGTTTCAAGAGCTCACTAGGATGATCAATATGCCCAGTAGTGATTATCGAAGTTCATCAGGGTC AGGATCCGTGATTCTAGATGACTGTAATTTCCATGAATCTGTGCGTCTTGAGAGCTTTGATTCAGACAGAACTTTGTCTCTGGTGCCACCAGACGGTGAA TTCCCTGTAATGAATTATCGCATGACCCAGGAATTCAAACCACCCTTCCGCATTAATACTTTGATTGAAGAGGCAGGAAGGCTTAGGGCTGAAGTGATTC TCAAGTTCTCTGCCGAGTTTCCCTCAAATATTACAGCAAACACAATTATTGTACAAATGCCACTGCCAAAATATACTGCCAGAGCAACGTTTGAGTTGGA ACCTGGAGCAGTTGGGCAGACAACTGATTTCAAGGAATCGACTAAGAAGCTTGAATGGGGACTAAAGAAGGCAAGAGCATTCTTGGATGTTTCAGGTGGA TCTGAACACACATTACGAGCAAAGCTGACGTTTTCTCAGGAGTTGCATGGGAATATAACAAAAGAAGCTGGGCCAGTCAGCATGACATTTACAATACCAA TGTACAATGTCTCCAAGCTTCAGGTGAAATACTTGCAAATAGCAAAGAAATCGAGCTCATACAATCCATACAGGTGGGTGAGATATGTAACGCAGGCCAA CTCATATGTTGCACGCATTTGA
AA sequence Show only first row Show all	>Lus10024548 pacid=23169596 polypeptide=Lus10024548 locus=Lus10024548.g ID=Lus10024548.BGIv1.0 annot-version=v1.0 MISQFFVLSQRGDNIVFRDYRGDVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNMSPSLVLELLQRIARVIKDYLGILN EDSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVIDAVRLQPPNPASIFMHGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSS SGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLTIGTNGGRSNYGRFQELTRMINMPSSDYRSSSGSGSVILDDCNFHESVRLESFDSDRTLSLVPPDGE FPVMNYRMTQEFKPPFRINTLIEEAGRLRAEVILKFSAEFPSNITANTIIVQMPLPKYTARATFELEPGAVGQTTDFKESTKKLEWGLKKARAFLDVSGG SEHTLRAKLTFSQELHGNITKEAGPVSMTFTIPMYNVSKLQVKYLQIAKKSSSYNPYRWVRYVTQANSYVARI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	0	1
AT4G24550			Clathrin adaptor complexes med...		Lus10003537 [exp]	1.0	0.9047
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10026809 [exp]	2.4	0.8323
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	4.0	0.8298
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	4.2	0.8408
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	4.5	0.8153
AT1G60460			unknown protein		Lus10036440 [exp]	5.1	0.7446
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	11.5	0.8071
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	11.6	0.7409
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	12.7	0.7994
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	13.0	0.8048

Compare expression of checked genes

Lus10024548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.