Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010839 [exp] 174 / 1e-52 AT3G30200 47 / 9e-06 Plant transposase (Ptta/En/Spm family) (.1) Lus10005359 [exp] 120 / 3e-33 ND 41 / 1e-04 Lus10008053 [exp] 111 / 4e-29 ND / Lus10002537 [exp] 112 / 1e-27 AT1G09640 634 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10034588 [exp] 97 / 4e-24 ND / Lus10004997 [exp] 88 / 6e-21 ND / Lus10017843 [exp] 82 / 3e-19 ND / Lus10042521 [exp] 79 / 3e-18 ND / Lus10016838 [exp] 61 / 8e-11 AT2G24960 71 / 4e-14 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024550 pacid=23169605 polypeptide=Lus10024550 locus=Lus10024550.g ID=Lus10024550.BGIv1.0 annot-version=v1.0 ATGTTGGTGATGGAGATGGGGATGAATTTCCCCACAATTTTGACTTCTCGGGTGATAGTTGTCGTGGTAGTGAATGGGGATTTTGATGATGTAGATAGGG TTGATGAAGAAGTAGTTACAACAAAGAAGAAGAACAAGAAAATGTGCCGATGGATTCCAGGGAAGGACAGGGGACTTTGGCATGTTTTGGTCCGAGGGAT CAAGACTAAGGAAGTGGAGAGAGTGATTGGAGAAAATGCACCGATAGTTATTCTTTTTCTAGAGAGGTCAGATCCTATGGGTGATGCTGCTAGCATTCCA AACCGTTTCATTAGGGATGTCGCCAAGGACACCAACCACCTCCCTATTAGTGCCTCGGACTGGAGACTGGTTGATAAGGTCAAGAAGCAAAAGTTCTATA GTCGGTTAATCGAGAAAAAAGTGAAGCAGAACAAGAAAAATAAGGTGAAGCAAAAGAGGAACCACGCAGGTGGGTTGAGGCCATACTTTCGTTACCATCA GGAGCTCTTTCAAAAGACTGGCATAGTACCTTCTAGAGGAGAGTTTTGGAGGCGAGCTAACAAAGGGGTGGATGGAACTGGGGAAAATCCACATGTTGAA GCAATAGCGGTATGGCTTCCTCGACAAGAAGGGTATAATGATTCTCTAGATTTGGCACTTCGTGATCTACATCCAGACTACAAAGGAGAGAATTCTAGGA GACTGATGACTATGGGTAAATCTGTTACCCCATCACAGCTGAATTGCACTACGTCAAGTAGTAGAGTTTCTAGTGCCACCTCTTCATATGCACACATTGG TGATGGGCGTCCAGAATATGAAGATGCAATTCGTCGGATGCAGGAAGAGTGGCTTCAGAGGGAGGCTGTAAGAGAGATTGAGTGGAGTATGAGGGAGGCT TAA
AA sequence Show only first row Show all	>Lus10024550 pacid=23169605 polypeptide=Lus10024550 locus=Lus10024550.g ID=Lus10024550.BGIv1.0 annot-version=v1.0 MLVMEMGMNFPTILTSRVIVVVVVNGDFDDVDRVDEEVVTTKKKNKKMCRWIPGKDRGLWHVLVRGIKTKEVERVIGENAPIVILFLERSDPMGDAASIP NRFIRDVAKDTNHLPISASDWRLVDKVKKQKFYSRLIEKKVKQNKKNKVKQKRNHAGGLRPYFRYHQELFQKTGIVPSRGEFWRRANKGVDGTGENPHVE AIAVWLPRQEGYNDSLDLALRDLHPDYKGENSRRLMTMGKSVTPSQLNCTTSSSRVSSATSSYAHIGDGRPEYEDAIRRMQEEWLQREAVREIEWSMREA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024550 [exp]	0	1
					Lus10000550 [exp]	1.4	1.0000
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003645 [exp]	2.8	1.0000
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	3.2	1.0000
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	3.5	1.0000
					Lus10005465 [exp]	3.7	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	4.5	1.0000
					Lus10009800 [exp]	5.7	1.0000
					Lus10025894 [exp]	6.3	1.0000
					Lus10010778 [exp]	7.3	1.0000
					Lus10011848 [exp]	7.5	1.0000

Compare expression of checked genes

Lus10024550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.