Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12110 404 / 2e-143 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 398 / 8e-141 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 365 / 7e-128 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT1G07420 176 / 4e-54 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 161 / 2e-48 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G14290 47 / 5e-06 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 47 / 6e-06 SBH1 sphingoid base hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032193 [exp] 497 / 4e-180 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004321 [exp] 373 / 2e-131 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004322 [exp] 337 / 6e-117 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 329 / 4e-114 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10028908 [exp] 252 / 2e-83 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1) Lus10001556 [exp] 167 / 1e-50 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10016492 [exp] 166 / 5e-50 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 164 / 3e-49 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10004988 [exp] 70 / 2e-14 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116000 [exp] 429 / 6e-153 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G116500 [exp] 429 / 6e-153 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 337 / 6e-117 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G245300 [exp] 168 / 6e-51 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 167 / 1e-50 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10024555 pacid=23161527 polypeptide=Lus10024555 locus=Lus10024555.g ID=Lus10024555.BGIv1.0 annot-version=v1.0 ATGCTGCCCTATAGCTCAATCGAGGACGCGGCGGCCCACCTAGGCCGGAACCTGACGTACGCTGAGACCGTTTGGTTCGACTACTCCGCTAACAAGTCGG ATTACTTCCTCTTCTGCCACAACATTCTGTTCCTCTTCGTGATCTTCTCGTTAGTCCCGCTCCCGATCGTCTTCATCCAGCTCCTCCGATCAGCTACGTT TGAGCGGTACAAGATCCAGCCCAAGGTTCAGCTCTCCAACTCAGAGATCTTCAATTGCTACAAGGATGTCATGCTCACTTTCTTCTTCGTCGTCGGCCCT CTCCAGCTCGTCTCTTACCCTTCTATCCAGATGATTGGGATACGCACAGGGTTGCCATTGCCTTCAGGATGGGAAATTCTTGCGCAGTTGTTGGTTTACT TTGTGGTGGAGGACTATACAAACTACTGGGTGCATAGATTTCTCCATGGGAAATGGGGGTATGAGAAGATTCACAAGGTTCATCACGAGTACACGGCTCC AATTGCTTTTGCTGCTCCGTATGCACACTGGGCTGAGATTTTGATCCTTGGGATCCCTTCTTTTCTGGGTCCAGCTATGGTTCCAGGCCACATGATCACT TTCTGGATGTGGATCGCTTCAAGGCAGATGGAGGCCATTGAAACACACAGTGGATATGACTTCCCATGGAGTCTCACTAAGTACATCCCATTCTACGGTG GTGCTGATTACCATGACTATCATCACTACGTCGGAGGCCAGAGCCAGAGCAACTTTGCATCAGTGTCCCCCTACTGTGATTACATTTACGACCAAAACAC CTTTCGCAATACCACCTAG
AA sequence Show only first row Show all	>Lus10024555 pacid=23161527 polypeptide=Lus10024555 locus=Lus10024555.g ID=Lus10024555.BGIv1.0 annot-version=v1.0 MLPYSSIEDAAAHLGRNLTYAETVWFDYSANKSDYFLFCHNILFLFVIFSLVPLPIVFIQLLRSATFERYKIQPKVQLSNSEIFNCYKDVMLTFFFVVGP LQLVSYPSIQMIGIRTGLPLPSGWEILAQLLVYFVVEDYTNYWVHRFLHGKWGYEKIHKVHHEYTAPIAFAAPYAHWAEILILGIPSFLGPAMVPGHMIT FWMWIASRQMEAIETHSGYDFPWSLTKYIPFYGGADYHDYHHYVGGQSQSNFASVSPYCDYIYDQNTFRNTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10024555 [exp]	0	1
					Lus10020368 [exp]	5.5	0.8458
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	5.9	0.8259
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	6.0	0.8393
AT5G17910			unknown protein		Lus10020367 [exp]	6.6	0.8489
AT1G09750			Eukaryotic aspartyl protease f...		Lus10014173 [exp]	7.3	0.8146
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	8.4	0.8058
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	8.7	0.8357
AT5G52882			P-loop containing nucleoside t...		Lus10027550 [exp]	10.8	0.8087
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	11.8	0.8132
AT1G71140			MATE efflux family protein (.1...		Lus10006171 [exp]	12.0	0.7292

Compare expression of checked genes

Lus10024555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.