Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12380 721 / 0 unknown protein AT1G62870 718 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032194 [exp] 1182 / 0 AT1G12380 788 / 0.0 unknown protein Lus10004325 [exp] 754 / 0 AT1G62870 977 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116600 [exp] 733 / 0 AT1G62870 1017 / 0.0 unknown protein Potri.015G130800 [exp] 669 / 0 AT1G12380 899 / 0.0 unknown protein Potri.012G129100 [exp] 669 / 0 AT1G12380 890 / 0.0 unknown protein Potri.003G115900 [exp] 622 / 0 AT1G62870 1028 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024556 pacid=23161654 polypeptide=Lus10024556 locus=Lus10024556.g ID=Lus10024556.BGIv1.0 annot-version=v1.0 ATGGCATCGGCAGACAATAACGCGGCGGCGGAGGCGGAGACGGAGGAGCCGACGGCGAAGGCGGCGCACAAGCGATACGAATGTCTTGTAACGGTGAGGA ACAAGGCCATCAAGGGGAAAGGAGCCTGGTACTGGGCCCACCTGGAGCCGATCTTGGTTCATAACTCCGACACCGGACTCCCCAAATCAGTCAAGCTCCG CTGCTCGTTATGCGCCGCCGTTTTCTCCGCCTCCAACCCTTCCCGCACGGCGTCGGAGCACCTCAAGCGCCGGACTTGCCCGAATTTCGCCGCTTCTTCC CCTTCCGTTCCGCCGCCGCCGCTCGCCGTCGCCGGGATGAAGCGTCCGGCCGCCTCTTCCGCCTCCGCCCACCACCACGACCAGAGCTACGACCTCTCCG TTTCCACCGTCTCCGTTTCTTCCCCTTCGTCGTTTCAGCACAGCCCCACTCCGATCACCGTCGTGGAGCCGCCGCGCCTCTGTCAGGTGCTCTCCGGCGG GAAGGAGGATCTTGTCCCGCTGGCAATGTTGGAAGACAGCGTGAAAAGAATGAAAAGCCCCTCGACGCTCCGTTCACCTCCTCCGCCGCCGGCGCTCAGC CGGGAGCAAATCGACTCTGCAATGGACTACTTGTCCGATTGGGTCCACGAATCTTGCGGCGGCGTCTCTCTCTCCAGCCTCGACCACCCAAAATTCCGAA GCTTCCTAAATCAAGTCGGCCTCCCTCCGATCTCCATCCGAACTCTCGCTGCCGGAAGACTCGACGCCAAGTTCGAGCAAGCGAAAGCAGAGTCCGAAGC TAGGATCAGCGAAGCCATGTTTTTCCAGATTGCATCCGACGGCTGGAATTCAAACCAACCGATTTGCTGTTCTGGAGGAGAGCCCGAACCCAATTTGGTT AATTTGACAGTCAATTTACCCAACGGCACGAGTCTTTACCGGCGAGCTGTTTTCGTCACCGGTTCAGAGAAAACGGCGTCGTTTTACGCAGAGGATATTT TTTTGGAAACTGCTAAAGGAATCTGCGGCGGAGAAGGAGAAAAGATTCGGAAGTGCGCCGGAATTGTCTCCGACCGGTTTAAATCGAAGGCGCTGAGGAA TCTGGAGGATAAGTATCCATGGATGGTGAATCTCTGCTGTCAGATTCAAGGGTTTCGAAGCTTGGGGAAAGATTTCGCCAGAGAGATTCCTCTGTTCGAA TCTGTGGCAGAGAATTGTCTAAAGCTGGGAGCTTTCGTCAACAGCAGCCTACAGATTAGGGAAAAGCTGTACAGATACCAGTTTCAGGAATACGGGTGCT CGGTTCCGATCCGAGTTTCGAAATTCCTCGATTGGAATTCCGAGACCGCCTTCTCGACGATCGACGACGTTATGAACTCTGCCAAGGCCCTGCAGATGGT TCTGACGGACGAGTCCTGTAAGCTGCGAGACGCGTTCTGGAGCGAACTGGAGGCGGTCCATTCGCTAGCGAAACTGGTTAAGGAAATCGGTCAGGAGATC GAACGGGAAAGGCCATTAATCGGACAATGCCTGCCGATTTGGGAAGAGTTTGGAGCGAAAGTGAGGGAATGGAGCGAGAAGTATTATAACATCGGCGGGT TCGAACCGGTTACTAAAGTGATCGAGAGGCGGTTCGCGAAGAGCTATCATCCGGCAATGGTGGCAGCCTACATACTCGATCCGGTTTACTTGGTTAAGGA CTCGAGCGGGAGGAAGTACCTCCCGCCGTTCAAGGACCTGACACCAGAGCAAGAGAAGGATGTGGGGAGGCTCGTGACGAGGCTGGTTTCGAGGGAGGAG GCGCACATTGCGCTGATGGAGCTGATGAAGTGGCGGACCGAGGGGCTCGATCCGGCCTACGCGAGGGCGGTCCAGATGAAGGAGAGGGATCCGGTTAGTG GGAAGATGAAACTGTCCAATCCGCAGAGTAGTAGGATTGTGTGGGAGACTTGCTTGAGTGATCAGTTCAGGACTTTGGGGAAAGTTGCTGTCAGGGTTAT CTTTCTTCATGCAACTGCTTGTAGTGGGTTCAAGTGGGATGGTCTTAATAGGCCTAATTTGCTGAGATGGGTTGGTGGTGGATCGGGGAGACTGGATTCG GTCGAGACTGAGAAGGCTCAGAAGATAATCTTCGTCGCTGCTCATTCGAAGCTCGGGAGGCGCGAAAGAAGAAGTTTTTCGAGCGAGGGAAACGACGGGG AGGCTAATGGAGATGATGATGATGTTGGTGATGAAACTACTTCTTCCATGTAA
AA sequence Show only first row Show all	>Lus10024556 pacid=23161654 polypeptide=Lus10024556 locus=Lus10024556.g ID=Lus10024556.BGIv1.0 annot-version=v1.0 MASADNNAAAEAETEEPTAKAAHKRYECLVTVRNKAIKGKGAWYWAHLEPILVHNSDTGLPKSVKLRCSLCAAVFSASNPSRTASEHLKRRTCPNFAASS PSVPPPPLAVAGMKRPAASSASAHHHDQSYDLSVSTVSVSSPSSFQHSPTPITVVEPPRLCQVLSGGKEDLVPLAMLEDSVKRMKSPSTLRSPPPPPALS REQIDSAMDYLSDWVHESCGGVSLSSLDHPKFRSFLNQVGLPPISIRTLAAGRLDAKFEQAKAESEARISEAMFFQIASDGWNSNQPICCSGGEPEPNLV NLTVNLPNGTSLYRRAVFVTGSEKTASFYAEDIFLETAKGICGGEGEKIRKCAGIVSDRFKSKALRNLEDKYPWMVNLCCQIQGFRSLGKDFAREIPLFE SVAENCLKLGAFVNSSLQIREKLYRYQFQEYGCSVPIRVSKFLDWNSETAFSTIDDVMNSAKALQMVLTDESCKLRDAFWSELEAVHSLAKLVKEIGQEI ERERPLIGQCLPIWEEFGAKVREWSEKYYNIGGFEPVTKVIERRFAKSYHPAMVAAYILDPVYLVKDSSGRKYLPPFKDLTPEQEKDVGRLVTRLVSREE AHIALMELMKWRTEGLDPAYARAVQMKERDPVSGKMKLSNPQSSRIVWETCLSDQFRTLGKVAVRVIFLHATACSGFKWDGLNRPNLLRWVGGGSGRLDS VETEKAQKIIFVAAHSKLGRRERRSFSSEGNDGEANGDDDDVGDETTSSM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12380			unknown protein		Lus10024556 [exp]	0	1
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	2.2	0.8720
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	7.5	0.8525
AT3G06150			unknown protein		Lus10004424 [exp]	8.7	0.8637
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	14.0	0.8519
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	14.7	0.8401
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	17.9	0.8370
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	19.0	0.8346
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020416 [exp]	19.1	0.8519
AT1G62730			Terpenoid synthases superfamil...		Lus10032248 [exp]	20.9	0.8045
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	24.7	0.8373

Compare expression of checked genes

Lus10024556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.