Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12370 765 / 0 UVR2, PHR1 UV RESISTANCE 2, photolyase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032195 [exp] 946 / 0 AT1G12370 766 / 0.0 UV RESISTANCE 2, photolyase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116800 [exp] 808 / 0 AT1G12370 789 / 0.0 UV RESISTANCE 2, photolyase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10024557 pacid=23161618 polypeptide=Lus10024557 locus=Lus10024557.g ID=Lus10024557.BGIv1.0 annot-version=v1.0 ATGGGTTCCCTATCTCCTCCACCGGGAGATTCCGTCTCCGTCAGTCCGGGTCGGATCCGGGTGCTTAAAGAAGCGTCGCCGCCGACGGGAAAGGGTCCCG TCGTGTACTGGATGTTCAGGGACCAACGGTTGAAGGACAACTGGGCGTTGATCCACGCCGTTGATCAGGCGAACAAAGGGAACGTCCCCTTAGCAGTTGC ATTCAACCTTTTCGATGGGTTTCTCGGGGCCAAAGCACGGCAATTGGGGTTTATGCTTAGGGGCTTGAAGCAGCTTCAAAAAGATGTTGAGGAGAAGCTT CAGATTCCCTTCTTCTTGTTCCGTGGAGAAGCTGAAGAAACTGTGCCTAAGTTTTTGAAAGAGTGCGGGGCGTCGCTTTTGGTGACCGATTTCTCACCCT TAAGGGAGATCCGGAAGTGTAAAGAAGAGATCTTGAAGAGAGTGAGCGGTCCGGTGAGTGTTCATGAAGTTGATGCTCATAATGTGGTGCCAATGTGGGT GGCTTCTGAGAAGTTGGAGTATAGCGCTAGGACTATAAGGAGCAAGATTACGAAAAAGTTACCAGAGTATCTCCTCGATTTCCCGGTGTTGAATCCACCG ATAGTTAAGTGGGTTGGCACCGTAGATGATCATTATCACGCTGTTGATTGGGAAAGTATCATCCTTGAGGTTTTGAGGAAAGGAGCAGAAGTTCCGGAAA TCGAATGGTGCACACCGGGAGAAGAAGCTGCAATGGAGGTACTGATGGGATCCAAAGATGGTTTCTTGACTAAAAGGGTGAAGAATTATTCTACAGATAG GAACATCCCGTTGAAGCCGAAAGGGCTCTCTGGTTTATCGCCATACCTTCATTTCGGTCAGATTTCTGCTCAGAGGTGTGCCCTCGAGGCGCGTAAAGTT AGGCCGCTGTGTCCTCAGTCAGTCGATGCATTTTTAGAGGAGCTGATCGTGCGGAGAGAGCTTGCTGATAATTTCTGCTACTACCAGCCACACTACGGTT CTATCGCAGGAGCTTGGGAATGGGCTCGGAGGACATTGCAGGATCATGCTGGTGACAAAAGAGAGCATGTTTACTCGATGGAGCAGCTGGAGATGGCAAA AACCATGGATCCTCTTTGGAATGCTTCTCAGATGGAGATGGTCATCCACGGGAAGATGCACGGATTCATGAGAATGTACTGGGCTAAAAAGATACTGGAA TGGACAAAAGGACCAGAAGAAGCTCTAGCAATTGCCATAGATCTAAACGACAAGTACGAAATAGATGGCAGGGATCCAAGTGGATACGTTGGTTGTATGT GGTCGATATGTGGCGTTCATGATCAGGGATGGAAGGAGAGGCCGGTATTCGGCAAGATAAGGTACATGAACTACGCAGGCTGCAAAAGGAAATTCAACGT CGATGGTTACATTTCCTACGTGAAGAGGCTTGCTGTTGAAGTGAAGAAGAGGAAAGCCGAGTCTCAACTCGACCGAAACGGCAAGGAATTGTGTCGTTAG
AA sequence Show only first row Show all	>Lus10024557 pacid=23161618 polypeptide=Lus10024557 locus=Lus10024557.g ID=Lus10024557.BGIv1.0 annot-version=v1.0 MGSLSPPPGDSVSVSPGRIRVLKEASPPTGKGPVVYWMFRDQRLKDNWALIHAVDQANKGNVPLAVAFNLFDGFLGAKARQLGFMLRGLKQLQKDVEEKL QIPFFLFRGEAEETVPKFLKECGASLLVTDFSPLREIRKCKEEILKRVSGPVSVHEVDAHNVVPMWVASEKLEYSARTIRSKITKKLPEYLLDFPVLNPP IVKWVGTVDDHYHAVDWESIILEVLRKGAEVPEIEWCTPGEEAAMEVLMGSKDGFLTKRVKNYSTDRNIPLKPKGLSGLSPYLHFGQISAQRCALEARKV RPLCPQSVDAFLEELIVRRELADNFCYYQPHYGSIAGAWEWARRTLQDHAGDKREHVYSMEQLEMAKTMDPLWNASQMEMVIHGKMHGFMRMYWAKKILE WTKGPEEALAIAIDLNDKYEIDGRDPSGYVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDGYISYVKRLAVEVKKRKAESQLDRNGKELCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10024557 [exp]	0	1
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10032195 [exp]	4.7	0.7802
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	6.2	0.7860
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	15.0	0.7574
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	24.4	0.7201
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	26.3	0.7385
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	27.8	0.7545
AT2G25530			AFG1-like ATPase family protei...		Lus10002025 [exp]	28.9	0.7511
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	29.3	0.7556
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	35.8	0.7425
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	41.0	0.7324

Compare expression of checked genes

Lus10024557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.