Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53020 197 / 1e-65 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1) AT2G36620 197 / 2e-65 RPL24A ribosomal protein L24 (.1) AT2G44860 72 / 2e-16 Ribosomal protein L24e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032198 [exp] 225 / 2e-76 AT2G36620 240 / 1e-82 ribosomal protein L24 (.1) Lus10006314 [exp] 214 / 4e-71 AT2G36620 233 / 2e-78 ribosomal protein L24 (.1) Lus10029583 [exp] 214 / 8e-71 AT2G36620 232 / 4e-78 ribosomal protein L24 (.1) Lus10008640 [exp] 209 / 7e-70 AT2G36620 243 / 1e-83 ribosomal protein L24 (.1) Lus10035584 [exp] 208 / 1e-69 AT2G36620 241 / 5e-83 ribosomal protein L24 (.1) Lus10014637 [exp] 100 / 5e-28 AT2G36620 100 / 6e-28 ribosomal protein L24 (.1) Lus10020552 [exp] 78 / 2e-18 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085300 [exp] 206 / 8e-69 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.015G141900 [exp] 203 / 7e-68 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139400 [exp] 202 / 2e-67 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139500 [exp] 202 / 2e-67 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.003G123101 [exp] 194 / 3e-64 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.009G148500 [exp] 73 / 2e-16 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G187800 [exp] 72 / 2e-16 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01246 [flax] [poplar] Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence Show only first row Show all	>Lus10024560 pacid=23161658 polypeptide=Lus10024560 locus=Lus10024560.g ID=Lus10024560.BGIv1.0 annot-version=v1.0 ATGGTTTTGAAGACTGAGCTATGCCGTTTCAGCGGTCAGAAGATTTACCCCGGCAGGGGGATCAGATTCATACGATCTGATTCTCAGGTTTTCCTCTTTG CCAACTCGAAATGCAAGAGGTACTTCCACAACCGATTGAAGCCTTCGAAGCTCACCTGGACCGCCGTGTTCAGGAAGCAGCACAAGAAGGACATTGCTGC TGAGGCTGTGAAGAAGAAGAGAAGGACCAACAAGAAGCCTTACTCGAGGTCCATTGTCGGTGCTTCCTTGGAGGTGATTCAGAAGAGGAGGGCTGAAAAG CCCGAAGTCCGAGACGCTGCTCGTGAAGCTGCCATTCGTGAAATCAAGGAGAGGATTAAGAAGACCAAGGATGAGAAGAAGGCGAAGAAGGCTGAAGTTT CCAAGTCACAGAAGGGCCAAGGGAAGAGTGGTATGCCTAGGGGTGCTGCACCGAAGGGAGGTCCCAAGCTCGGCGGTGGCGGTGGAAAGCGATGA
AA sequence Show only first row Show all	>Lus10024560 pacid=23161658 polypeptide=Lus10024560 locus=Lus10024560.g ID=Lus10024560.BGIv1.0 annot-version=v1.0 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAVFRKQHKKDIAAEAVKKKRRTNKKPYSRSIVGASLEVIQKRRAEK PEVRDAAREAAIREIKERIKKTKDEKKAKKAEVSKSQKGQGKSGMPRGAAPKGGPKLGGGGGKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10024560 [exp]	0	1
AT2G31410			unknown protein		Lus10031995 [exp]	1.0	0.8886
AT3G02080			Ribosomal protein S19e family ...		Lus10020836 [exp]	4.5	0.8626
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	13.0	0.8381
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10038012 [exp]	13.0	0.8201
AT5G27470			seryl-tRNA synthetase / serine...		Lus10017409 [exp]	13.3	0.8219
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	13.4	0.8256
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	14.7	0.8346
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10039155 [exp]	21.0	0.8059
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	27.0	0.8058
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10003936 [exp]	27.2	0.8110

Compare expression of checked genes

Lus10024560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.