Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60800 375 / 4e-131 DHHC-type zinc finger family protein (.1) AT4G22750 319 / 5e-109 DHHC-type zinc finger family protein (.1.2) AT4G22753 308 / 6e-101 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G00840 265 / 4e-88 DHHC-type zinc finger family protein (.1) AT3G09320 116 / 2e-30 DHHC-type zinc finger family protein (.1) AT5G04270 106 / 4e-27 DHHC-type zinc finger family protein (.1) AT5G50020 89 / 1e-19 DHHC-type zinc finger family protein (.1.2) AT3G26935 86 / 2e-18 DHHC-type zinc finger family protein (.1) AT4G24630 84 / 4e-18 DHHC-type zinc finger family protein (.1) AT5G05070 80 / 1e-16 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032199 [exp] 548 / 0 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10002694 [exp] 286 / 4e-95 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10009291 [exp] 121 / 4e-33 AT3G60800 202 / 3e-65 DHHC-type zinc finger family protein (.1) Lus10030211 [exp] 119 / 5e-33 AT4G00840 159 / 5e-49 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 113 / 2e-29 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 111 / 1e-28 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 110 / 3e-28 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 95 / 2e-21 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 93 / 5e-21 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117100 [exp] 407 / 1e-143 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 406 / 4e-143 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 397 / 9e-140 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 367 / 7e-128 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 288 / 7e-97 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 115 / 4e-30 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 112 / 6e-29 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 107 / 4e-27 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 95 / 5e-22 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 95 / 1e-21 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024561 pacid=23161613 polypeptide=Lus10024561 locus=Lus10024561.g ID=Lus10024561.BGIv1.0 annot-version=v1.0 ATGTGGCAGAAATCTGGAGGAGGAGGGGATGGAGGGTCAATAATGGCGCTGAATGTGTTCAAGTTCTGTACTTTCCTTAGGGCTCTTGGCTCCATCATGA TCGTCTTCGTGATCGGCATCGTGGGGTTGACTTATTATGTCATCGTTGTGGATAATTATGGCCCAGCTCTGTTCCATGGCGGGATTGAGTCTTTTGTTGC GTTCCTCGTCCTGGCTTTCTTCCATGCCCTGTTGGTGATGCTTGTATGGAGTTACTTCTCCACCATTGTAACTGAACCTGGTGGCGTCCCGCAAAACTGG AGGCCAGCAACAGACGAGGAGAGCGGCGTTTCAGATCCTTTGGTTGGTATGGAAAACAATGCTGTCTTGGGTCTAAATCAGGATAGTGGGAAAGCACGAT TCTGCCGGAAATGCAACCAGTTTAAACCGCCTCGTTGCCATCACTGCTCAGTTTGCCAAAGATGCATATTGAAGATGGACCACCACTGCGTGTGGGTTGT TAATTGCGTTGGGGCGATGAACTACAAGTATTTCCTATTATTCTTGTTCTACACATTCCTTGAAACGACTCTTGTCACTATATCATTGCTCCGGCTATTT GTAGCATTTTTCGGGGATGGTGAAATAGATGGAACGCCAGCAGATCTCGTCGCTACTTTCATTGCATTTGTGTTGAATTTGTCCTTTGCATTGAGTCTCC TTGGCTTCCTTGTTCTGCACATATCACTGGTGTTAGCAAATACCACAACCATTGAGGCATATGAAAAGAAAACTGATCCTAGATGGCGGTATGACCTCGG ACGGATGAGAAACTTTGAACAGGTATTTGGAACCGACAAGAGATACTGGCTAATACCGAGGTACTCGGCCGATGATTTGAAGCACATGCCGGCGCTGAAA GGGCTCGATTACCCAACAAGGTCTAACTTGGATGAGCTTCAGCAGCTCTGA
AA sequence Show only first row Show all	>Lus10024561 pacid=23161613 polypeptide=Lus10024561 locus=Lus10024561.g ID=Lus10024561.BGIv1.0 annot-version=v1.0 MWQKSGGGGDGGSIMALNVFKFCTFLRALGSIMIVFVIGIVGLTYYVIVVDNYGPALFHGGIESFVAFLVLAFFHALLVMLVWSYFSTIVTEPGGVPQNW RPATDEESGVSDPLVGMENNAVLGLNQDSGKARFCRKCNQFKPPRCHHCSVCQRCILKMDHHCVWVVNCVGAMNYKYFLLFLFYTFLETTLVTISLLRLF VAFFGDGEIDGTPADLVATFIAFVLNLSFALSLLGFLVLHISLVLANTTTIEAYEKKTDPRWRYDLGRMRNFEQVFGTDKRYWLIPRYSADDLKHMPALK GLDYPTRSNLDELQQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	0	1
AT3G60800			DHHC-type zinc finger family p...		Lus10032199 [exp]	3.2	0.8655
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	4.0	0.8931
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	4.9	0.8864
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	6.5	0.8938
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	9.2	0.8720
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	11.4	0.8827
AT1G25420			Regulator of Vps4 activity in ...		Lus10041442 [exp]	12.5	0.8878
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	13.2	0.8743
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	14.3	0.8651
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	17.4	0.8556

Compare expression of checked genes

Lus10024561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.