Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02570 1236 / 0 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 979 / 0 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 939 / 0 Cullin family protein (.1) AT1G59790 413 / 6e-139 Cullin family protein (.1) AT1G26830 398 / 3e-128 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 394 / 8e-127 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 344 / 4e-107 CUL4, ATCUL4 cullin4 (.1) AT1G59800 266 / 8e-84 Cullin family protein (.1) AT2G04660 57 / 4e-08 APC2 anaphase-promoting complex/cyclosome 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032200 [exp] 1477 / 0 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 1409 / 0 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 1404 / 0 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10036739 [exp] 412 / 9e-134 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 404 / 2e-130 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 404 / 3e-130 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 397 / 1e-127 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 311 / 4e-96 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 206 / 8e-58 AT5G46210 913 / 0.0 cullin4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G217300 [exp] 1231 / 0 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 1220 / 0 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 1219 / 0 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 1204 / 0 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G148300 [exp] 404 / 2e-130 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 401 / 3e-129 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 358 / 4e-112 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 344 / 1e-106 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217700 [exp] 236 / 7e-72 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 223 / 4e-69 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF10557 [flax] [poplar] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Lus10024562 pacid=23161559 polypeptide=Lus10024562 locus=Lus10024562.g ID=Lus10024562.BGIv1.0 annot-version=v1.0 ATGGAGCGGAAGGTTATTGAGCTGGATCAGGGATGGGACTTCATGCAGAATGGGATCACGAAGCTGAAGGGTATTCTAGAAGGGGGAGCTGATCAATTCA ACTCTGAAGAATATATGATGCTTTACACGACAATATACAATATGTGTACTCAGAAGCCTCCTCATGATTACTCGCAGCAGCTTTATGACAAGTATAAGGA GGCGTTTCAAGAGTACATTAGCTCCACTGTACTCCCCGCCATTAAGGAAAAGCATGACGAGTTTATGCTGAGAGAACTTGTGAAGAGATGGGCTAATCAT AAGCTCATGGTTCGATGGCTTTCCCGGTTCTTCCATTATCTGGATCGATATTTCATTGCCCGGAGATCACTTCCTGCACTTAAAGAAGTTGGACTAACGT GCTTCCGTGACCTGGTCTATAAGGAAGTAAATGTAAAAGCCAGGAATGCTGTGATCGCTCTGATTGATCAAGAACGAGAGGGGGACCAAATTGACCGAGC TTTACTGAAGAACGTTTTGGACATATTTGTTGAGATTGGAATGTCACAGATGGATTATTATGAGCAGGATTTTGAGGCCCCTATGCTAGAAGATACCGGA GTATACTACAGCCAGAAGGCTTCGAATTGGATTCAGGATGATTCTTGTCCAGCTTATATGTTAAAGTCTGAGGAATGCCTGAAGAAGGAAAGAGACAGGA TTGCAAATTATTTACACTCGAGTAGTGAGGGAAAACTCGTGGAGAGAGTGCAACATGAGTTGCTGGTGAACTTCTCCACTCAACTGCTTGAGAAGGAGAA TTCTGGGTGCCGTGCTCTTCTTAGAGACGATAAGGTGGAGGATCTGTCTCGCATGTATAGGCTGTATCATAAGATACCTAAAGGTCTAGATCCTGTTGCT ACCATATTCAAACAGCACATTACCTCAGAAGGAACTGTATTGGTACAGCAAGCTGAGGATGCTGCCACTACTCAGTCTGCAAGCGGCGGTCCCCAAGAAC AGGTGCTCATAAAGAAGGTGATTGAGATCCACGATAAGTATCTTGCTTATGTGGGCGATTGTTTCCAAAACCACACTCTGTTCCACAAGGCAATGAAAGA GGCCTTTGAGATATTCTGCAATAAAACTGTGGGTGGAAGTCCTAGTGCTGAACTCCTGGCAACATTCTGTGATAATATCCTAAAAAAAGGAGGCAGTGAG AAACTCAGCGATGAAGCTATTGAGGAGATACTGGAGAAGGTTGTCAAGCTGCTCGCTTACATTAGCGATAAGGATCTTTTTGCTGAATTCTATAGGAAAA AGCTTGCTCGCCGCCTGCTCTTTGAACGCAGTGCCAACGAGGAGCATGAAAAGAGCATTCTAACAAAGCTTAAGCAGCAATGTGGTGGACAATTCACCTC AAAGATGGAAGGAATGGTCACTGATTTGACCCTAGCGAAGGACAATCAGTCAGAGTTTGAGAACTATCTCTCCAACAATCCAAACGCACATCCGGGGATC GACTTATCTGTCAATGTTCTCACAACCGGATTCTGGCCAAGTTACAAGTCTTCCGATTTGAACCTTCCTTCCGAGATGGTCAGAGGCGTTCAAGTTTTCA AAGAGTTCTATGATACAAAGAGCAAGCACAGGAAGCTGACATGGATCTACTCTCTCGGATCATGCCAGCTTACTGGCAAGTTTGAAGCGAAGAATATCGA GATGGTCGTCTCTACTTATCAGGCTGCCATACTGTTATTGTTCAATACCTCAGACAGGCTGAGCTACTCAGAGATCATGACTCAATCGAACTTGGGGCAT GAAGACATGGTCAGGTTGTTGCACTCCTTATCGTGTGCCAAGTATAAAATCCTAATCAAGACACCAAATACAAAGACTGTCGCCCAAACCGACATCTTCG AGTTCAACCCTAAGTTCACCGACAGAATGAGGAGGATCAAGATTCCTCTGCCAGTAGTGGACGAGAGGAAGAAGGTCGTTGAGGACGTCGACAAAGACAG GCGTTACGCCATTGACGCCGCCATCGTGAGGATCATGAAGAGCCGGAAAGTGCTTGGTCACCAGCAGTTGGTCATGGAGTGTGTCGAGCAGCTCAGTCGC ATGTTCAAGCCGGACATCAAAGCGATCAAGAAGCGGATGGAGGATTTGATAGCTCGGGAGTATCTGGAGAGGGACAAGAACAACGCCAACATGTTTAGGT ATCTGGCTTAG
AA sequence Show only first row Show all	>Lus10024562 pacid=23161559 polypeptide=Lus10024562 locus=Lus10024562.g ID=Lus10024562.BGIv1.0 annot-version=v1.0 MERKVIELDQGWDFMQNGITKLKGILEGGADQFNSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKEAFQEYISSTVLPAIKEKHDEFMLRELVKRWANH KLMVRWLSRFFHYLDRYFIARRSLPALKEVGLTCFRDLVYKEVNVKARNAVIALIDQEREGDQIDRALLKNVLDIFVEIGMSQMDYYEQDFEAPMLEDTG VYYSQKASNWIQDDSCPAYMLKSEECLKKERDRIANYLHSSSEGKLVERVQHELLVNFSTQLLEKENSGCRALLRDDKVEDLSRMYRLYHKIPKGLDPVA TIFKQHITSEGTVLVQQAEDAATTQSASGGPQEQVLIKKVIEIHDKYLAYVGDCFQNHTLFHKAMKEAFEIFCNKTVGGSPSAELLATFCDNILKKGGSE KLSDEAIEEILEKVVKLLAYISDKDLFAEFYRKKLARRLLFERSANEEHEKSILTKLKQQCGGQFTSKMEGMVTDLTLAKDNQSEFENYLSNNPNAHPGI DLSVNVLTTGFWPSYKSSDLNLPSEMVRGVQVFKEFYDTKSKHRKLTWIYSLGSCQLTGKFEAKNIEMVVSTYQAAILLLFNTSDRLSYSEIMTQSNLGH EDMVRLLHSLSCAKYKILIKTPNTKTVAQTDIFEFNPKFTDRMRRIKIPLPVVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVMECVEQLSR MFKPDIKAIKKRMEDLIAREYLERDKNNANMFRYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	0	1
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	2.2	0.9051
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	3.9	0.8776
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	4.0	0.9037
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	4.2	0.8872
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	5.5	0.8942
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	6.2	0.8792
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	6.9	0.8994
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	7.5	0.8984
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Lus10038957 [exp]	7.5	0.8786
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	7.7	0.8855

Compare expression of checked genes

Lus10024562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.