Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22740 192 / 2e-58 glycine-rich protein (.1.2) AT2G45380 129 / 1e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032201 [exp] 456 / 4e-162 AT4G22740 187 / 1e-56 glycine-rich protein (.1.2) Lus10015873 [exp] 135 / 3e-37 AT2G45380 212 / 2e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117400 [exp] 252 / 1e-81 AT4G22740 209 / 3e-64 glycine-rich protein (.1.2) Potri.003G115400 [exp] 249 / 1e-80 AT4G22740 212 / 5e-66 glycine-rich protein (.1.2) Potri.014G069100 [exp] 155 / 6e-45 AT2G45380 198 / 1e-59 unknown protein Potri.002G147150 [exp] 54 / 8e-09 AT2G45380 68 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024563 pacid=23161652 polypeptide=Lus10024563 locus=Lus10024563.g ID=Lus10024563.BGIv1.0 annot-version=v1.0 ATGCAAGGAGGAAGAGGTGGAGGGAATCCTTTCTCTGGGTTTGGTGATCCATTTGGAGGTTTTGGAGGATTTGGTGGTTTTGGAGGCCAGATGAGTTTTC CTTTTGGCCTTCCAGGCGGAAGAGATCCATTCGACGATCCTTTCTTTACTCGTCCATTCGGAGGAATGTTTGAGTCCAATATCTTTGGTCCCAATGCAAA TCCTTTTGTGCCTATGCAACCGCCAATGCATATTGAGCATCAAGCCCCAGGAGCCAATAGACCACGAGGGCCAGTAATCAAGGAACTAGACTCTGATGAT GAGACACAGGATGCTCATGAGGAGAGGAAGGCGAACTCCAGGAAGCATGGGAGGTCCATTAATGAGCCATACATCTATGAAGTAGATGATGAAGCTGAAG GGAGACAAAGCAGGCAAAACAGGCTCAGCACAATGCAGAATCAGCCCCATAGTCGGAGCTTTGTGGTTCAAAGTTCAACCGTCTCATATGGTGGTAGCAA TGGCACCTACTACACTTCATCCAAGACAAGGAGAACAGGAAGTGATGGGGTGATGTTTGAAGAAAGCAAAGAAGCTGATACTTCTACAAAGAAAGCATCT CATAGGATTTCCAGGGGCATACACAATAAGGGCCATACACTAGACCGAAAGCTTAACCCAGACGGGAAGGTTGATACCCAGGAGATCCTGCACAATCTCG AGCAAGATGAACTTCTTCGTTTCGAGCAATCTTGGAAAAATAATGATACACAGACCCTGCCTCACTGGGCTCAGTGGGGTGGAAACTACAGTGGCTTCGA TAATATGAGTCACTGTGGCAGTGCACAGAATCATCCTCAGGCTAGTCATGGAATCCGGGCACTTCCATCGACAGAACGCTCGAATCCAACTGACAGATTG GTGGTAGCATCTTCTGGTCGTCAGCACTCGGGAAAGTCGAAGCATGCAGGCAAGAATTCCGCGTCTGGTTCGCAAGGACGCTGA
AA sequence Show only first row Show all	>Lus10024563 pacid=23161652 polypeptide=Lus10024563 locus=Lus10024563.g ID=Lus10024563.BGIv1.0 annot-version=v1.0 MQGGRGGGNPFSGFGDPFGGFGGFGGFGGQMSFPFGLPGGRDPFDDPFFTRPFGGMFESNIFGPNANPFVPMQPPMHIEHQAPGANRPRGPVIKELDSDD ETQDAHEERKANSRKHGRSINEPYIYEVDDEAEGRQSRQNRLSTMQNQPHSRSFVVQSSTVSYGGSNGTYYTSSKTRRTGSDGVMFEESKEADTSTKKAS HRISRGIHNKGHTLDRKLNPDGKVDTQEILHNLEQDELLRFEQSWKNNDTQTLPHWAQWGGNYSGFDNMSHCGSAQNHPQASHGIRALPSTERSNPTDRL VVASSGRQHSGKSKHAGKNSASGSQGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22740			glycine-rich protein (.1.2)		Lus10024563 [exp]	0	1
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	3.9	0.9153
AT3G62140			unknown protein		Lus10009976 [exp]	8.0	0.8925
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	10.0	0.9082
AT3G52220			unknown protein		Lus10039101 [exp]	11.6	0.9030
AT5G09390			CD2-binding protein-related (....		Lus10015844 [exp]	11.7	0.8599
AT3G62140			unknown protein		Lus10038035 [exp]	12.0	0.8918
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	12.4	0.8897
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10027283 [exp]	12.7	0.8759
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	13.3	0.9005
AT5G47090			unknown protein		Lus10035063 [exp]	14.3	0.8821

Compare expression of checked genes

Lus10024563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.