Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62850 283 / 8e-97 Class I peptide chain release factor (.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032202 [exp] 259 / 7e-88 AT1G62850 230 / 3e-77 Class I peptide chain release factor (.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115300 [exp] 315 / 3e-109 AT1G62850 258 / 2e-87 Class I peptide chain release factor (.2.3) Potri.001G117500 [exp] 302 / 2e-104 AT1G62850 306 / 3e-106 Class I peptide chain release factor (.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10024564 pacid=23161666 polypeptide=Lus10024564 locus=Lus10024564.g ID=Lus10024564.BGIv1.0 annot-version=v1.0 ATGAACGTAGTTACCAGAGCTTCAACCGCCACCATGATTCTACGAGCTTTCAATTGCTGCCGCCTCTTCTCTTGCGCTTCTTCTTACCAATCTCCGTCTC TCAGGCTGCTAACTTCCACCGCCGCTCTTCACTCCGCCCGGAGGCAAATCAGCTTCTCCGGGATCGTTTGTTTGGCGGCCGATGACAAGAAGGTCTCCGC TCGTCTCTCTCAAGTTCAGCAGCTCCTCCAAGAGGCTGAGGATCGGGCTAGCTCCGGCAGCAACGAGCCAATTCCTCAAATCACTATAGACAATGTGACT GTGAGTTTCGCTAGGAGTGGAGGGCCTGGGGGTCAGAATGTGAACAAAGGTATTGTTGATTCTCCCTCTTATTTTCTGGCATTCTGCAGCAGTGGTGCTT TAGTTCTCTTACATTTGAGGGATCTGTTGGCCTTGGTTGGATTTGTAGTGAATACGAAGGTGGATATGCGGTTCAATGTTAAGAATGCGCACTGGCTAAG TGAAAGGGTCAAGGAGAAGATAATGCAAATGGAAAAGAATCGAATCAACAAAGATGGTGAAATCGTCATCTCCTCAACAAAGACCAGAACACAGAAAGGT AACATTGAGGATGCTTTGTCAAAATTGCAGGCAATCATTGATGCTGCCTCTTACGTGCCGCCACCTCCGTCAGAAGAGCAAAAGAAGAAAATCGCAAAGC TAGCTGCAATAGGTGAGCATAAGCGACTGAAAAGCAAGAAGGTTCTTTCGGATAAGAAAGCATTCAGAAGAAGCCGAGACAACTGGGACTGA
AA sequence Show only first row Show all	>Lus10024564 pacid=23161666 polypeptide=Lus10024564 locus=Lus10024564.g ID=Lus10024564.BGIv1.0 annot-version=v1.0 MNVVTRASTATMILRAFNCCRLFSCASSYQSPSLRLLTSTAALHSARRQISFSGIVCLAADDKKVSARLSQVQQLLQEAEDRASSGSNEPIPQITIDNVT VSFARSGGPGGQNVNKGIVDSPSYFLAFCSSGALVLLHLRDLLALVGFVVNTKVDMRFNVKNAHWLSERVKEKIMQMEKNRINKDGEIVISSTKTRTQKG NIEDALSKLQAIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVLSDKKAFRRSRDNWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62850			Class I peptide chain release ...		Lus10024564 [exp]	0	1
AT2G35010		ATO1	thioredoxin O1 (.1.2)		Lus10016544 [exp]	21.0	0.7024
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10016189 [exp]	26.7	0.6565
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10039940 [exp]	36.0	0.6477
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	40.7	0.6703
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	45.9	0.7036
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10019650 [exp]	69.6	0.6167
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	76.5	0.6578
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10034354 [exp]	83.6	0.6847
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Lus10035856 [exp]	94.7	0.6534
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	148.2	0.6328

Compare expression of checked genes

Lus10024564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.