Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45360 202 / 1e-65 Protein of unknown function (DUF1442) (.1) AT3G60780 194 / 3e-62 Protein of unknown function (DUF1442) (.1) AT1G62840 171 / 3e-53 Protein of unknown function (DUF1442) (.1) AT1G12320 141 / 2e-41 Protein of unknown function (DUF1442) (.1) AT5G62280 52 / 7e-08 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032203 [exp] 232 / 6e-78 AT2G45360 125 / 1e-36 Protein of unknown function (DUF1442) (.1) Lus10031701 [exp] 62 / 2e-11 AT5G62280 179 / 2e-56 Protein of unknown function (DUF1442) (.1) Lus10031122 [exp] 62 / 2e-11 AT5G62280 166 / 3e-51 Protein of unknown function (DUF1442) (.1) Lus10041061 [exp] 50 / 5e-07 AT5G62280 55 / 6e-09 Protein of unknown function (DUF1442) (.1) Lus10006163 [exp] 49 / 6e-07 AT5G62280 59 / 2e-10 Protein of unknown function (DUF1442) (.1) Lus10027191 [exp] 49 / 1e-06 AT5G62280 150 / 5e-45 Protein of unknown function (DUF1442) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115200 [exp] 266 / 2e-90 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.001G117600 [exp] 259 / 5e-88 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 221 / 6e-73 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 202 / 2e-65 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1) Potri.014G098800 [exp] 82 / 1e-18 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.012G128900 [exp] 69 / 5e-14 AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) Potri.015G130500 [exp] 69 / 9e-14 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 67 / 3e-13 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 42 / 0.0001 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07279 [flax] [poplar] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Lus10024565 pacid=23161610 polypeptide=Lus10024565 locus=Lus10024565.g ID=Lus10024565.BGIv1.0 annot-version=v1.0 ATGAAGCTGGTATGGTCACCGGAGACGGCAACAAAAGCCTACATCGGAACTGTTAAAGCATGCGGGATCAGTCAGGAATCCGGCGTGGCGGAGCTAGTGG CGGCGATGGCGGCCGGCTGGAACGCGAAGTTCATAGTGGAGACGTGGTCGCACGGCGGGCCGGTGGGTCGGCCGGGGGGCCCGGGTCAGCCCCGCATGGG CTGGGCGGTCGGGAGCCGACACACCGGCGGGAGGCACGTCTGCGTTGTCCCTGATGAGAGTTCGAGGTCGGAGTATCTGAAAGCCTTTATGGAGCAGGCG GCGACTGGAGGAGGAGGAGGTGGAGGAGTTGATGTTGTTCTGCCGGCGGGGGATCAGGTGGTGGTTGGGGAGCCGGAGGAGGTGATGGAGAGGCTGGTCG GGGTTGATTTCCTGGTGGTGGATTCTAAGAGGAAGGATTTCGGTAGGGTGCTGAGAGCTGCGAAGCTGAGTAGTAGAGGAGCTGTGTTGGTATGTAAGAA CGCTAGCTCGAAGCAGGCGGCGAGCTTCCGGTGGAGAAGCGTCCTGGACGGCGGCTCCACAAGGCGGCTGGTGAGATCGGTGTATCTTCCGGCAGGGAAA GGGCTTGATATTGCTCATGTTGCGACGAGTGGTCCTGCTGGGAACTCCGGCCAGGGGAAAGGTGGAGGAGGAAAAAGCAGATGGATCAAACATGTTGATC GAGAATCAGGGGAGATACATGTTATCAGAAAGTAA
AA sequence Show only first row Show all	>Lus10024565 pacid=23161610 polypeptide=Lus10024565 locus=Lus10024565.g ID=Lus10024565.BGIv1.0 annot-version=v1.0 MKLVWSPETATKAYIGTVKACGISQESGVAELVAAMAAGWNAKFIVETWSHGGPVGRPGGPGQPRMGWAVGSRHTGGRHVCVVPDESSRSEYLKAFMEQA ATGGGGGGGVDVVLPAGDQVVVGEPEEVMERLVGVDFLVVDSKRKDFGRVLRAAKLSSRGAVLVCKNASSKQAASFRWRSVLDGGSTRRLVRSVYLPAGK GLDIAHVATSGPAGNSGQGKGGGGKSRWIKHVDRESGEIHVIRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45360			Protein of unknown function (D...		Lus10024565 [exp]	0	1
AT2G45360			Protein of unknown function (D...		Lus10032203 [exp]	1.0	0.9336
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	2.0	0.9085
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10009989 [exp]	7.5	0.8959
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	9.5	0.9164
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	11.6	0.9079
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	12.0	0.8743
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	23.0	0.9110
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	24.5	0.9064
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10039375 [exp]	31.4	0.8702
AT1G69670		CUL3B, ATCUL3B	ARABIDOPSIS THALIANA CULLIN 3B...		Lus10009610 [exp]	34.5	0.9017

Compare expression of checked genes

Lus10024565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.