Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12130 494 / 2e-175 Glycine cleavage T-protein family (.1) AT1G60990 47 / 2e-05 Glycine cleavage T-protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032204 [exp] 744 / 0 AT4G12130 510 / 0.0 Glycine cleavage T-protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117700 [exp] 528 / 0 AT4G12130 451 / 2e-158 Glycine cleavage T-protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0289 [flax] [poplar] FBD PF01571 [flax] [poplar] GCV_T Aminomethyltransferase folate-binding domain CL0289 [flax] [poplar] PF08669 [flax] [poplar] GCV_T_C Glycine cleavage T-protein C-terminal barrel domain
Representative CDS sequence Show only first row Show all	>Lus10024566 pacid=23161542 polypeptide=Lus10024566 locus=Lus10024566.g ID=Lus10024566.BGIv1.0 annot-version=v1.0 ATGCGCCGATTCAATTCCTTGAAACCCTTCCTCGCCGCCGGCAACCTCCGCCGCAACCACTCCGAAGCCATCGACGCCGCCGGTCCCGTAACCTCCCTCC TCAAATCCCGATCAGTAATCCGCTTCGCCGGCCCCGACACGATCAAGTTCCTCCAAGGCCTAGTGACCAACGATGTCCGACGATTCGGCGAATCCTCGCC GCACGAGCGTTCTTCGACGATACCCACTCCCAATATGCCATCCGCTTCCGAGCCGCCGATGTACGCCGCCTTGCTCACTCCCCAGGGTAGGTTCCTGTAC GATTTCTTCCTTTACAGACCCGCAAAGCAAGGAGATAAGCTCGACCAGACCGGTTCAGGTCCCGGGTCGGAACCCGGCGGCTCGCTTGAACTCTTCGCCG ATGTAGATGCTTCTGTGCTAGACGAGCTATTGCAAACTTTGAAAAAGTATAGGTTAAGGGCAAAGGTCGAGATCGAGAATGTAGGGGATGATTTTCATTG CTGGCAACGATTCGGGGGAGATATCGGCAAGAAATCCAGCAAAGTAGAAGAGCCAGAGGCAGCTAGTGTGGGATGGGGATCTGGTGTCGATCGTGCTGGT ATGTCGGCTTCACATGGAACTGGAAATGATGGTTGGCAATGGTTCAAAGATCCGAGACTCGAATGCCTCGGTTTTAGAGGGATCTTCCCATCTGATACGA CTCCTCCCTTAGTCGAGGCTGATAAGGAAACGAACGAGGAGAACTACCTCTTATGGCGAGTCGAGCAGGGAGTTGCAGAAGGCTCATCCGAGATTCGGAA AGGCGAGGCGATTCCGCTCGAGTACAATCTCGTGGGATTGAACGCGATAAGCTTTGACAAAGGTTGCTACGTTGGTCAAGAGCTTATTGCCAGGACGCAC CATCGAGGGGTGATTCGTAAACGCTTGGTTCCTTTGAAGTTCGTCGATGACAACGGAAAGGAGGTGGAACAGCAAGTAGCTCCTGGTTCGCAAGTGATCG ATGCTGCTTCAGGCAAGAAGATTGGTTCCGTAACTACCGCAATCGGTCACCGAGGCCTTGGCGTTTTGAGAGTGGACGATGCTTTCGGAGAACCAGGCTT GCTGGCTGTAGAAGGGCTGGAAAATGTCAAGGCAGAAGCTTTGAAACCAAAATGGTGGCCTCGTGAATGGTTTCCGGAGCATCATCAACAGAGTGCAGTA GCATAG
AA sequence Show only first row Show all	>Lus10024566 pacid=23161542 polypeptide=Lus10024566 locus=Lus10024566.g ID=Lus10024566.BGIv1.0 annot-version=v1.0 MRRFNSLKPFLAAGNLRRNHSEAIDAAGPVTSLLKSRSVIRFAGPDTIKFLQGLVTNDVRRFGESSPHERSSTIPTPNMPSASEPPMYAALLTPQGRFLY DFFLYRPAKQGDKLDQTGSGPGSEPGGSLELFADVDASVLDELLQTLKKYRLRAKVEIENVGDDFHCWQRFGGDIGKKSSKVEEPEAASVGWGSGVDRAG MSASHGTGNDGWQWFKDPRLECLGFRGIFPSDTTPPLVEADKETNEENYLLWRVEQGVAEGSSEIRKGEAIPLEYNLVGLNAISFDKGCYVGQELIARTH HRGVIRKRLVPLKFVDDNGKEVEQQVAPGSQVIDAASGKKIGSVTTAIGHRGLGVLRVDDAFGEPGLLAVEGLENVKAEALKPKWWPREWFPEHHQQSAV A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12130			Glycine cleavage T-protein fam...		Lus10024566 [exp]	0	1
AT4G12130			Glycine cleavage T-protein fam...		Lus10032204 [exp]	1.0	0.8305
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	16.1	0.7229
					Lus10030881 [exp]	16.9	0.7374
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Lus10028525 [exp]	19.5	0.7296
AT1G51580			RNA-binding KH domain-containi...		Lus10034831 [exp]	19.6	0.7342
AT1G18850			unknown protein		Lus10024247 [exp]	36.3	0.6584
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10019745 [exp]	41.3	0.6886
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Lus10038825 [exp]	42.6	0.6685
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10011368 [exp]	60.8	0.6016
AT1G07920			GTP binding Elongation factor ...		Lus10019918 [exp]	62.1	0.6670

Compare expression of checked genes

Lus10024566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.