Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62810 912 / 0 Copper amine oxidase family protein (.1) AT3G43670 886 / 0 Copper amine oxidase family protein (.1) AT4G12290 857 / 0 Copper amine oxidase family protein (.1) AT1G31690 588 / 0 Copper amine oxidase family protein (.1) AT1G31710 578 / 0 Copper amine oxidase family protein (.1) AT1G31670 555 / 0 Copper amine oxidase family protein (.1) AT4G14940 491 / 2e-165 ATAO1 amine oxidase 1 (.1) AT4G12280 431 / 3e-147 copper amine oxidase family protein (.1) AT4G12270 405 / 2e-134 Copper amine oxidase family protein (.1) AT2G42490 244 / 4e-70 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024571 [exp] 831 / 0 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 829 / 0 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 609 / 0 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 589 / 0 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 553 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 549 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 524 / 5e-178 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10013356 [exp] 397 / 4e-132 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10032206 [exp] 260 / 1e-82 AT1G62810 193 / 3e-58 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118200 [exp] 989 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118300 [exp] 876 / 0 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 647 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 623 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 593 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 545 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.010G045600 [exp] 244 / 6e-70 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 240 / 1e-68 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 233 / 3e-66 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10024568 pacid=23161584 polypeptide=Lus10024568 locus=Lus10024568.g ID=Lus10024568.BGIv1.0 annot-version=v1.0 ATGGAATTCCCCTCCGGCCGCCTTCTCCCCAACTTCCTCCTCTTCTTCATCCCAATCTTGCTCCTCTTCCATTTCTCCTCCTTCAACCCTCTTAACCACC ACCCCGATCCTCCCACCTCCTCCTCCTCCACCTCCTCCTCCATCACCAACAAATTCCGCCGCCAACCACCTAACGACCGACACAACTCCGCCGCACCCAA ACACCCACTCGACCCACTAACTGCCGCCGAAATCCACAAAGTCCGATCCATCCTCTCCACCTACAACCCCTTCGAGCTCCACTTCCCATCCATCCAATCC CTCACCCTGGACGAGCCGGAAAAATCCCGGGTCCTGGCATGGAACCAGGGCGACCCGGTTCCGCCCCGGAAGGCTTTCGTCGTCGCCTTCTTAGACAACC TTACCCACCTCCTCACAGTCGACCTTGACTCGAATCGAGTGGAGAGCCATTCGACCCGAGACGGGTCGAATGGCTACCCGATGATGACGAATGAGGACGT GGCGGCGACGATGGAGACGGCGATTTCGTACGGGAGGCTGAACGAGTCAGCAGCGGCGCGTGGTTTGTCGGTGGATGATCTGATTTGCCTTACTCCATCG CCGGGCTGGTTCGGGCCTGACGAGGAGGGGAGGCGGGTGGCCAGAGTGACCTGTTATTCGAAACAGGGGACGGTGAATTTCTACATGCGGCCATTGGAAG GGTTGGTGATGACTGTGGATATTGATCGGAGGGAGGTTGTGAAGTTTGTCGATAAAGGGAGAGGAATTCCGGTGCCGAGGAGTGATAATACGGATTACAG ATTCGCCGACGCGAAGAACACTCCGCCACCGGAGGTGGGTCGGGTTAACCCGATCTCTATGGAGCAGCCTGATGGGCCGAGTTTTAAGGTGAAGGATGGG TACAGGGTGGAGTGGGCAAACTGGGAATTTCACTTAAAGCCGGACTACCGGGCCGGGTTAATCGTGTCCCGGGCCACAGTCCGGGACCCGGAGACAGGGG AACGTAGGAGCGTGATGTACAAAGGGTTCCCGTCGGAGCTATTCGTGCCGTACATGGACGTCGACGAAGGGTGGTACTTCAAGTCGTACATGGACGCCGG CGAGTACGGGTTGGGAACGACGGCCATGCCACTCGTGCCGTTGAACGACTGTCCGAGGAATTCGTATTACATGGACGGGGTATTCGTGTCGGCCGACGGA CGGCCGTTCATTCAGCCCAACATGATTTGCCTGTTCGAACGGTACGCCGGCGACGCCGCGTGGAGGCATTCCGAGCTCCCCGTGATCTCCAGCGGTATTG AGATAAGAGAAGCAAGAGCTAAAGTGACATTAGTAGCTCGAATGGCAGCAACAGTTGGCAACTACGACTACACATTCGATTGGGAATTCCAAACCGACGG CTTGATCAAGATCACGGTCACCCTATCAGGAATGCTAATGGTGAAAGGCACAATCCAGGACAACACGAACCAAGTCCCGGATCAGGAAGACGAAGGTCCC CTGGTGTCGGAGAACATAATCGGAGTGGTTCACGACCACTTCGTCACGTTCCACCTGGACATGGACGTGGACGGACCCAACAACACGTTCGTGAAGGTCA ACTTGGTGAAGGAAGAGAACACACAGGGAAAAACTCCTAGGAAGAGCTACTTGAGACCGAAGAGACACGTGGCGAAAACGGAGGAGGATGCTCGAATCAG GCTGAGCTTGTACGATCCTTCGGAGTTCCATGTCGTCAACCCTTCGAGGAGGTCGAGGCTGGGGAACCCTTCCGGGTACAAGGTCGTCCCCGGTGGGAAT GCTGCTAGCTTGCTCGATCCTGATGATCCGCCTCAGTTGAGGAGTGCTTTCACTAATAATCAGATATGGGTGACGCCCTATAACCGAACCGAGCAATGGG CAGGAGGGCTACTAGCGTACCAAAGCCACGGCGACGACACACTCGACGTCTGGTCAAAACGAAACAGGGGAATCGAGAACAAGGACGTGGTACTATGGTA CACATTGGGATTCCACCACATTCCATGCCAAGAGGATTTCCCTTTGATGCCCTCTGTCGCATCGAGCTTCCAGCTTAAGCCGGTGAACTTCTTCGATCGA AATCCGATTCTCAAGGCTCCACCAGTGTTCGAGAAGGACTTGCCCGTTTGCAGGGCCTCCTCCGGCTCCGGCTCTTCTGCAGTGGTTTGA
AA sequence Show only first row Show all	>Lus10024568 pacid=23161584 polypeptide=Lus10024568 locus=Lus10024568.g ID=Lus10024568.BGIv1.0 annot-version=v1.0 MEFPSGRLLPNFLLFFIPILLLFHFSSFNPLNHHPDPPTSSSSTSSSITNKFRRQPPNDRHNSAAPKHPLDPLTAAEIHKVRSILSTYNPFELHFPSIQS LTLDEPEKSRVLAWNQGDPVPPRKAFVVAFLDNLTHLLTVDLDSNRVESHSTRDGSNGYPMMTNEDVAATMETAISYGRLNESAAARGLSVDDLICLTPS PGWFGPDEEGRRVARVTCYSKQGTVNFYMRPLEGLVMTVDIDRREVVKFVDKGRGIPVPRSDNTDYRFADAKNTPPPEVGRVNPISMEQPDGPSFKVKDG YRVEWANWEFHLKPDYRAGLIVSRATVRDPETGERRSVMYKGFPSELFVPYMDVDEGWYFKSYMDAGEYGLGTTAMPLVPLNDCPRNSYYMDGVFVSADG RPFIQPNMICLFERYAGDAAWRHSELPVISSGIEIREARAKVTLVARMAATVGNYDYTFDWEFQTDGLIKITVTLSGMLMVKGTIQDNTNQVPDQEDEGP LVSENIIGVVHDHFVTFHLDMDVDGPNNTFVKVNLVKEENTQGKTPRKSYLRPKRHVAKTEEDARIRLSLYDPSEFHVVNPSRRSRLGNPSGYKVVPGGN AASLLDPDDPPQLRSAFTNNQIWVTPYNRTEQWAGGLLAYQSHGDDTLDVWSKRNRGIENKDVVLWYTLGFHHIPCQEDFPLMPSVASSFQLKPVNFFDR NPILKAPPVFEKDLPVCRASSGSGSSAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62810			Copper amine oxidase family pr...		Lus10024568 [exp]	0	1
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10005860 [exp]	4.5	0.8390
AT5G59050			unknown protein		Lus10001626 [exp]	11.2	0.8136
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10030303 [exp]	12.5	0.7021
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	13.4	0.7778
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	21.1	0.7978
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	21.5	0.7101
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	24.7	0.7685
					Lus10026628 [exp]	27.1	0.7945
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	28.3	0.7254
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	30.0	0.7476

Compare expression of checked genes

Lus10024568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.