Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12230 515 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032207 [exp] 637 / 0 AT4G12230 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10031137 [exp] 47 / 3e-05 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118000 [exp] 527 / 0 AT4G12230 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G114900 [exp] 525 / 0 AT4G12230 542 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10024569 pacid=23161673 polypeptide=Lus10024569 locus=Lus10024569.g ID=Lus10024569.BGIv1.0 annot-version=v1.0 ATGAAAGGCGTCTTAGCGGCGCCGGGAGATTATGTCCACTTCAAGTCCCAAGTCCCTCTCCATAAGATCCCAATTGGCTCGAAGCAGTGGAGATACTACG ATTACGGTCCGAAACAGGTTCCTCCTCTGATTTGTCTTCCTGGAATAGCAGGCACAGCAGATGTGTATTACAAACAGATAATGGCATTGTCCATGAAGGG CTACCGGGTAATCTCTGTGGATATTCCGCGAGTTTGGAATCATATGGAGTGGATCCAGGCGTTTGAGAAGTTTCTAGATGTCATTGATGTCCGTCATATG CACCTGTATGGTACATCTCTTGGAGGCTTCTTAGCTCAAATATTTGCACAGTATCGTCCAAGACGAGTGAAATCATTGGTACTCTCGAATTCATTTCTCG ATACCCGGAGTTTCGCTGCTACTATGCCATGGGCGCCTTTTGTTAGCTGGACTCCTTCGTTTTTGCTGAAACGATACGTTCTGACTGGAATTCAAGACGG TCCTCACGAACCCTTCATTGCAGATTCAGTGGACTTCGTCGTCTCTCAGGTAGAAACACTCTCAAAGGATGACTTGGCCTCGAGGCTGACATTGAACGTA GATGCTCAAGCGGTTGGATCCCTCCTCCTTTCGGATCAATTCATCACTATAATGGATACAAATGACTACTCTGCAACTCCTCGGCAACTGAAAGATCAGT TGAGCGAGAGATATCCAGAAGCCAGGCAAGCTTACTTGAAGACTGGAGGCGAATTCCCTTTTCTTTCGCGTTCAGATGAAGTCAACTTGCATCTCCAGCT ACATCTGAGACGAGTCGGGGTAGAGCCACGACCAGACCTAGTCAGGGGCGGTATCCCTGGAGGCAATGCTGGTGGTGGTGGTGGAAGTGGGAGTCATAGC AAAGAGAACGACGAAAAGGAAGAAGATCAAGAAGACGATTATCAACCGAGAGACGGAGGAGATAACTCTGCGAGTACATCATCATCATCCTCAGGCACCA ATCCGCTACCTTTACCCCCACCGGATAGTTCCGAATCACTAGGCACAACAGACGCTCAGCACGTAGTAGATTCGGGTGTCACGGCTGGTTTTCTTACACA ACAGTTGGTTGCGTCTTATGTTGCATACTTGTACATTAGTTTAAACTACAGTGGTGAACCTAGACAGTTGGTGTAG
AA sequence Show only first row Show all	>Lus10024569 pacid=23161673 polypeptide=Lus10024569 locus=Lus10024569.g ID=Lus10024569.BGIv1.0 annot-version=v1.0 MKGVLAAPGDYVHFKSQVPLHKIPIGSKQWRYYDYGPKQVPPLICLPGIAGTADVYYKQIMALSMKGYRVISVDIPRVWNHMEWIQAFEKFLDVIDVRHM HLYGTSLGGFLAQIFAQYRPRRVKSLVLSNSFLDTRSFAATMPWAPFVSWTPSFLLKRYVLTGIQDGPHEPFIADSVDFVVSQVETLSKDDLASRLTLNV DAQAVGSLLLSDQFITIMDTNDYSATPRQLKDQLSERYPEARQAYLKTGGEFPFLSRSDEVNLHLQLHLRRVGVEPRPDLVRGGIPGGNAGGGGGSGSHS KENDEKEEDQEDDYQPRDGGDNSASTSSSSSGTNPLPLPPPDSSESLGTTDAQHVVDSGVTAGFLTQQLVASYVAYLYISLNYSGEPRQLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	0	1
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	1.0	0.9637
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	1.4	0.9511
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	1.7	0.9319
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10023478 [exp]	2.8	0.9286
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	3.0	0.9160
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	4.9	0.9206
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10035785 [exp]	5.9	0.8925
AT1G50510			indigoidine synthase A family ...		Lus10022419 [exp]	6.0	0.8913
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	7.9	0.9183
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	8.3	0.9012

Compare expression of checked genes

Lus10024569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.