Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12240 214 / 2e-68 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G52010 103 / 8e-26 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032208 [exp] 382 / 3e-134 AT4G12240 402 / 5e-140 zinc finger (C2H2 type) family protein (.1) Lus10024807 [exp] 109 / 8e-28 AT5G52010 456 / 6e-160 C2H2-like zinc finger protein (.1) Lus10018728 [exp] 107 / 8e-28 AT5G52010 375 / 5e-130 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114700 [exp] 270 / 2e-89 AT4G12240 424 / 5e-148 zinc finger (C2H2 type) family protein (.1) Potri.014G025100 [exp] 110 / 5e-28 AT5G52010 441 / 5e-154 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10024570 pacid=23161581 polypeptide=Lus10024570 locus=Lus10024570.g ID=Lus10024570.BGIv1.0 annot-version=v1.0 ATGATGAATCGCTTTAGGCAGATTCACGAGCGTGAAAATCAGAAGAGAGTGAACCAGATTGAATCTGCTAGAGGGAAGAGGAGGGTCAACTTGGTTGGTA AGTTTGCTATGAAGATGCAGAAGTACAAGAACGCTTCCAGGGAGGTACTGACTCCGAAGGTCGGGTATGGACTTGCTGACGAGCTGAGGAGGGCGGGGGA GGTTTCGAGCAAGCCGGAGGCAGCAGATGTGGCGTTGAAGGAGAGGATGGTGGACGTGACGGACAAAAGGAAAGCTGAGTACTTGGTGCTTATCTCGGAC GATTCGGGTTTCCTTGGGGTGCTTAAGGAGGCGAAATCGAGGTGTTTGAAGACTGTTGTGGTTGGGAACATGATGGAAGAAGGTGCGAAGTTGAAGAGGG TTGCTGATGCTGGATTCTCTTGGCAGGAGGTGTTGATGGGGAAGGCTAAGAAGGAAGGAGCTGCGGTCGTGGGGAAATGGAGCGATCGAGATGTTTTGGA AAGGCTGGAGTGGAGGTTTGATCCTGAGAAGGAGAAGGATGCTTTTGCTGCTGTTAATCAGTTCTACAGTTGTAATGCTGATGCTGATCATGAAGGGTTT GATGATAGCTACTTTGATTGGGATGGAGTTGATGTTGTGAAGAGGGAAGATTCTGGTTCTTGGTGGGAGCTGGATTCTGAATCACGATGA
AA sequence Show only first row Show all	>Lus10024570 pacid=23161581 polypeptide=Lus10024570 locus=Lus10024570.g ID=Lus10024570.BGIv1.0 annot-version=v1.0 MMNRFRQIHERENQKRVNQIESARGKRRVNLVGKFAMKMQKYKNASREVLTPKVGYGLADELRRAGEVSSKPEAADVALKERMVDVTDKRKAEYLVLISD DSGFLGVLKEAKSRCLKTVVVGNMMEEGAKLKRVADAGFSWQEVLMGKAKKEGAAVVGKWSDRDVLERLEWRFDPEKEKDAFAAVNQFYSCNADADHEGF DDSYFDWDGVDVVKREDSGSWWELDSESR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10024570 [exp]	0	1
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021501 [exp]	4.4	0.9121
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10040861 [exp]	13.0	0.8816
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	14.4	0.8838
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	19.6	0.8725
AT4G38380			MATE efflux family protein (.1...		Lus10023943 [exp]	20.3	0.8228
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	20.3	0.8816
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	21.5	0.8955
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	24.0	0.8877
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	35.2	0.8816
AT5G19970			unknown protein		Lus10019451 [exp]	39.5	0.8755

Compare expression of checked genes

Lus10024570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.