Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12290 954 / 0 Copper amine oxidase family protein (.1) AT1G62810 832 / 0 Copper amine oxidase family protein (.1) AT3G43670 812 / 0 Copper amine oxidase family protein (.1) AT1G31690 570 / 0 Copper amine oxidase family protein (.1) AT1G31710 560 / 0 Copper amine oxidase family protein (.1) AT1G31670 540 / 0 Copper amine oxidase family protein (.1) AT4G14940 513 / 1e-173 ATAO1 amine oxidase 1 (.1) AT4G12280 465 / 2e-160 copper amine oxidase family protein (.1) AT4G12270 456 / 2e-154 Copper amine oxidase family protein (.1) AT2G42490 234 / 3e-66 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032209 [exp] 1325 / 0 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 821 / 0 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 593 / 0 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 585 / 0 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 562 / 0 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10010540 [exp] 561 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 560 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 418 / 2e-140 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10041208 [exp] 240 / 2e-71 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118300 [exp] 1059 / 0 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 853 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 607 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 604 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 589 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 580 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.010G045600 [exp] 245 / 2e-70 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 240 / 1e-68 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 234 / 2e-66 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10024571 pacid=23161661 polypeptide=Lus10024571 locus=Lus10024571.g ID=Lus10024571.BGIv1.0 annot-version=v1.0 ATGGATCAACCATCTCACTTCTCCCGCTTCCTCTTCCTCTTACTCGCCGCCGGCACCCTCCTCCTCTTCACCTACTCCACTTACCCAACTTCCCTTCCGC CGACGACTAATTCCTCCCCTAACTTCTCCGCCTCAAATAATTCCTCCTCTAGAAAAGTCGCCGGCATCCTCAAACAACCCTCCAAAACCCCCATCACCTC CTCCTCCGCCACCTCCTCCGCCCGCCGCCGGCGCCACGAGTCCGCCGTTCCCCACCACCCTCTCGACCCCTTAACCATCCAGGAGCTCAACAAAGTCCGC AAAATCATCCACTCCCACGACCTCTTCAAACCCCCTGCCTCCGTCGCCCTCCACACCGTCGTCCTGGAAGAGCCGCCGAAGTCCGCCGTCCTCCGCTGGT CCCCCGGCGACCCCCTCCCTCCCCGAAAGGCATTCGCGGTCGCTCGTGTCGCCGCAACGGCGTATCTACTGTCCGTTGACATCGCCGCCGGCCACCTCAC TGCGACTCCGGCCACCGGATCGGGCTATCCGACGATGACGGTGGAGGACATGACGTCAGCAACTTGGGCCCCGTTCTCCAGCGTGGAGTTCAATCGGACG GTGGAGAATCGCGGGGTGGATATGGATGACGTGGCGTGTTTACCGATTTCTTCGGGTTGGTTTGGCGAAAAGGAAGTGGGTCGGAGGTTGATTAAGGTTC AGTGCTACTCTATGAAAGGTACGGTTAACTTCTACATGAGGCCGATCGAAGGGCTGACGGTGGTCGTCGATCTCGATACGAAAGAGGTTATCTCGATTGT CGACATGGGGAAGCAGATCCCCATACCGAAGGCTGCCAACACGGATTATCGCTTTTCGGCGATTAACCAACGGTTGGATCTCGTCAATCCAATCTCCCTT GAGCAACCGAGGGGACCCACTTTTAAGGTGACGGACGGTCACTCTGTAAAGTGGGCAAATTGGGAATTTCACCTGAAACCCGACCCCCGGGCCGGGGTGA TCGTGTCCCGGGCCAAGGTTAGGGACCCGGACACTGGGGCGATGAGGAGCGTGATGTACAAAGGGTACACTTCTGAGCTTTTCGTGCCCTACATGGACCC CACCGACGCGTGGTACTTCAAGACCTACATGGACGCAGGCGAGTATGGGTTCGGGCTGAACTCGATGTCGCTCGACCCGCTAAACGACTGCCCACGAAAT GCACACTATACGGACGCGGTGTTCGTCACCGGGGACGGGAAACCATACATCCGGCCGAATATGGTGTGCATATTCGAGAGCTACGGCGGAGATATCGGGT GGCGACATTCCGAAAGTCCGATCACCGGCATGGGGATTATTGAAGTGAGACCAAAAGTGACGCTTGTGGCTCGAATGGCAGCTTCAGTGGCTAATTACGA TTACATCATCGATTGGGAATTTCAAACCGATGGCCTCATCCGAATCAAGGTAGGACTCAGTGGGATTCTGATGGTTAAAGGAACGAACTACGCGAACAAA AACGAAGTCCCGGAGCACGAGAACCTCTACGGCACAATGCTGTCGGAGAACGTGATCGGAGTGATCCACGACCACTACGTCACATTCTATCTGGACATGG ACGTGGACGGGGTCGACAACTCGTTCATCAACGTCCACATCAAGAAGGAGCAGACTTCCCCGGAGGAGCATTCCCCAAGGAGGAGCTACCTCAAGGTGGT GAGGGAAGTGGCCAAGTCGGAGAAGGAGGCACAGATCAAGTTCCAGTTGTACAGCCCGTCCGAGTTCCACGTGGTCAACCCGGGCAAGACAACCCGGGTC GGGAATCCGGTCGGGTATAAGGTGGTGGCACAGGGTACCGCGGCGAGTCTGTTGGATCATTCAGACCCGCCGCAGGTACGTGGCGCGTTTACGAATAACC AGATTTGGGTCACGCCGTATAACCGGTCCGAAGAGTGGGCCGGCGGGTTGTTTGATTATCAGAATCAAGGGGAAGAGAATCTCCAAGTCTGGTCTGACAG GGATAGGCCAATTGAGAACAAAGACATAGTGGTGTGGTACACAATGGGATTCCACCACATTCCATGCCAAGAAGATTTCCCCATCATGCCTACGGTGTCG TCGAGCTTCGATCTCAAACCGGCCAATTTCTTCGAAAGGAATCCGATTCTTAGGATCCCGCCAAATGTCGAGAAGGACTTGCCCGTTTGCAAGGCCACTG CTTCTGCTTGA
AA sequence Show only first row Show all	>Lus10024571 pacid=23161661 polypeptide=Lus10024571 locus=Lus10024571.g ID=Lus10024571.BGIv1.0 annot-version=v1.0 MDQPSHFSRFLFLLLAAGTLLLFTYSTYPTSLPPTTNSSPNFSASNNSSSRKVAGILKQPSKTPITSSSATSSARRRRHESAVPHHPLDPLTIQELNKVR KIIHSHDLFKPPASVALHTVVLEEPPKSAVLRWSPGDPLPPRKAFAVARVAATAYLLSVDIAAGHLTATPATGSGYPTMTVEDMTSATWAPFSSVEFNRT VENRGVDMDDVACLPISSGWFGEKEVGRRLIKVQCYSMKGTVNFYMRPIEGLTVVVDLDTKEVISIVDMGKQIPIPKAANTDYRFSAINQRLDLVNPISL EQPRGPTFKVTDGHSVKWANWEFHLKPDPRAGVIVSRAKVRDPDTGAMRSVMYKGYTSELFVPYMDPTDAWYFKTYMDAGEYGFGLNSMSLDPLNDCPRN AHYTDAVFVTGDGKPYIRPNMVCIFESYGGDIGWRHSESPITGMGIIEVRPKVTLVARMAASVANYDYIIDWEFQTDGLIRIKVGLSGILMVKGTNYANK NEVPEHENLYGTMLSENVIGVIHDHYVTFYLDMDVDGVDNSFINVHIKKEQTSPEEHSPRRSYLKVVREVAKSEKEAQIKFQLYSPSEFHVVNPGKTTRV GNPVGYKVVAQGTAASLLDHSDPPQVRGAFTNNQIWVTPYNRSEEWAGGLFDYQNQGEENLQVWSDRDRPIENKDIVVWYTMGFHHIPCQEDFPIMPTVS SSFDLKPANFFERNPILRIPPNVEKDLPVCKATASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12290			Copper amine oxidase family pr...		Lus10024571 [exp]	0	1
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Lus10004599 [exp]	2.0	0.5361
AT1G23300			MATE efflux family protein (.1...		Lus10036852 [exp]	11.1	0.5277
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10002715 [exp]	33.3	0.5069
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10040230 [exp]	39.2	0.4792
AT1G27170			transmembrane receptors;ATP bi...		Lus10008319 [exp]	43.0	0.4892
AT4G36210			Protein of unknown function (D...		Lus10033181 [exp]	54.1	0.4770
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10014134 [exp]	104.1	0.4174
AT1G68570			Major facilitator superfamily ...		Lus10017817 [exp]	106.0	0.4251
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10023106 [exp]	120.4	0.4057
AT1G69630			F-box/RNI-like superfamily pro...		Lus10031499 [exp]	175.7	0.3769

Compare expression of checked genes

Lus10024571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.