Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 345 / 1e-115 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12310 343 / 1e-114 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G12330 340 / 1e-113 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12300 335 / 1e-111 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT5G44620 322 / 1e-106 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 321 / 6e-106 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 321 / 1e-105 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT1G33730 252 / 3e-81 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G07990 255 / 1e-80 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45560 254 / 2e-80 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032223 [exp] 330 / 7e-110 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10028914 [exp] 317 / 1e-104 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032222 [exp] 317 / 2e-104 AT4G12300 582 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10004331 [exp] 317 / 3e-104 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 302 / 1e-98 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 289 / 7e-94 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 289 / 2e-93 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 288 / 4e-93 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032211 [exp] 287 / 5e-93 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114400 [exp] 436 / 7e-151 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 357 / 3e-120 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 349 / 2e-116 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118400 [exp] 330 / 1e-109 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.009G069100 [exp] 270 / 1e-86 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 270 / 2e-86 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G274600 [exp] 270 / 2e-86 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 260 / 1e-82 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G094700 [exp] 256 / 6e-81 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.003G118200 [exp] 252 / 2e-79 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024572 pacid=23161645 polypeptide=Lus10024572 locus=Lus10024572.g ID=Lus10024572.BGIv1.0 annot-version=v1.0 ATGTTCTGGGGTGGGACCCTTGATGATGACGTGGCGACGGCTGAAGTTGTCGGGAGGGAGTTCCGTTCCATGGCGGCGGAGCTTGTTGAGGTTCTTGGGC GGCCTAATGTGTCTGACTTTTTCCCGGTCCTGGCAAGGTTTGACTTACAGGGAATAGAGAGGGAGATGAAGAGAGTGTCCGGTGGAATGGAAAAAATATT CGATTTTGTGATTGATCGATGCACTGAGATCATGAAGAAGAACAAGAAGAAGTCAACATCAGATCATGACCATAATCAGCACATTGACTTCCTGCATTTT CTATTGGATTATAGAGATGATGACACTGGAACATCCATCTCCAGACAGCACATTAAGGCCATGCTTATGGACATAGTAGTTGGAGGAACAGACACAAGCT CAACAACAATAGAATGGGCCATGTCGGAACTAATCCTACATCCCGAATCCATGAAAAGAGCCCAACTCGAGCTGGCCCAAGTGATCAAGCCCAACAACGT CGTCGAAGAATCCGACATTCCCAATCTACCCTTCCTCCGTGCGGTCATGAAGGAGACGTTACGGCTCCACCCGGTGGCCCCACTCCTCCTCCCTCGTTGC CCTACCGAATCGTGCCACGTAGGCGGCTACACGATCCCCAAGGGCGCCAAGGTGTTCCTCAACGTGTGGGCCATGCACAGGGACCCCGAGTATTGGGACG ATCCGACGTCGTTTATTCCTAAGAGGTTTCTTAAGGAGGAGTTGGATTACTTGGGGAACAATTATCATTACCTTCCGTTCGGGTCGGGAAGGAGAGTCTG TGCGGGTTTGCCGTTGGGTGAGAAGATGGTGATGTATGTGTTGGCTACCCTTTTGCACATGTTTGATTGGAGCGTCCCCGAAGGTGTGGTGACGGATACC GATGAGAAATTTGGGGTTGTTTTGGAGAAAGCTACTCCTTTGGTTTTGGTGCCAAATCCTAGATTGTCAAATGCAAGTCACTTGGGCCAAATTATAGAAA ATATAAATAGAATTGAAGTTCTAAATTTCGAGATGGGTTGGGGCAAGGCTGGTTTGCCTACAGCCTGGGGCAGAGTGTTATAA
AA sequence Show only first row Show all	>Lus10024572 pacid=23161645 polypeptide=Lus10024572 locus=Lus10024572.g ID=Lus10024572.BGIv1.0 annot-version=v1.0 MFWGGTLDDDVATAEVVGREFRSMAAELVEVLGRPNVSDFFPVLARFDLQGIEREMKRVSGGMEKIFDFVIDRCTEIMKKNKKKSTSDHDHNQHIDFLHF LLDYRDDDTGTSISRQHIKAMLMDIVVGGTDTSSTTIEWAMSELILHPESMKRAQLELAQVIKPNNVVEESDIPNLPFLRAVMKETLRLHPVAPLLLPRC PTESCHVGGYTIPKGAKVFLNVWAMHRDPEYWDDPTSFIPKRFLKEELDYLGNNYHYLPFGSGRRVCAGLPLGEKMVMYVLATLLHMFDWSVPEGVVTDT DEKFGVVLEKATPLVLVPNPRLSNASHLGQIIENINRIEVLNFEMGWGKAGLPTAWGRVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	0	1
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	1.0	0.8726
					Lus10020274 [exp]	7.1	0.7894
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10026959 [exp]	7.3	0.7096
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	8.5	0.7867
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	11.0	0.7777
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	12.2	0.8432
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	14.8	0.7573
					Lus10023136 [exp]	18.9	0.8021
					Lus10019295 [exp]	19.1	0.6583
AT4G08910			unknown protein		Lus10025524 [exp]	21.7	0.7518

Compare expression of checked genes

Lus10024572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.