Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 351 / 2e-115 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 348 / 2e-114 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12330 340 / 2e-111 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 340 / 3e-111 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 318 / 1e-102 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22690 304 / 9e-97 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 302 / 2e-96 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT2G45550 238 / 4e-72 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 238 / 6e-72 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 234 / 1e-70 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028914 [exp] 387 / 4e-129 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10004331 [exp] 380 / 2e-126 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 372 / 1e-123 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024577 [exp] 362 / 8e-120 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 363 / 9e-120 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 357 / 2e-117 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 356 / 3e-117 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032223 [exp] 349 / 5e-115 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 346 / 8e-114 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 379 / 3e-126 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 379 / 3e-126 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.003G114400 [exp] 373 / 6e-124 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 371 / 1e-122 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 270 / 2e-84 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.013G073300 [exp] 265 / 2e-82 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G118200 [exp] 257 / 2e-79 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.016G049800 [exp] 255 / 2e-78 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G117500 [exp] 246 / 4e-75 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 238 / 8e-72 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024573 pacid=23161567 polypeptide=Lus10024573 locus=Lus10024573.g ID=Lus10024573.BGIv1.0 annot-version=v1.0 ATGTACCCATGGAAAGATTACGAAATTCCATTACCTCCCCTTCACATATCGATCTTAATATTCCTGATGATATGCTACATATCTTACCTCGCAAAACAAT CAACAAAAAATCCACGATCACCCACACTACCTCCAGGACCTATAGGCTTACCGGTCGTCGGGTACGCCATGTTCCTCAAACCGAACCAAATCCACACCCA ACTCGCCCAGCTAGCATCCACTCACGGCCCAATATTCAAGTTCTGGGCCGGAGCCCAACTCTCCGTCGTAATTACATCTCCGACCCTAGCCAAACAGGTC CTCCGCCAAAACGACTCGATCTTCTACCAACGCAAAATCCCGATCGCCGCCGAAGTCGCGAGTTACAACGGGTCGGATCTCGCCTGCCTGCCGATGGGAC CCGGGTGGATCTCGATGCGGAAGGTTCTGATGCGAGAAGTGATTAGTAATTCCAGCTTGGATCGGTGCTATCCGCTGAGGAGGAGAGTCGTCGTGGCGGC GATGAGGGAGGTTGGTAAAGAAGTTGGAAAGCCGGTTGATGTTTTGGAGCTGGCGTTTAAGACGGTGGTGGATGCGACTGTTGCCATGGTTTGGGGCAGC GGCGGTGGTGATTATGATTGCCGGCGGGAGGAAGTTAGAGAAGTCAATAAGAAGATTATGGAGCTTGTGGGGAAGCCGAATGCTTCGGACGTTTTTCCTC TGCTTGCGAGGTTTGATTTGCAGGGGATTGAACGAGAAGCAAGAGAGGCTGGTCGGCGGTTCGACCGAATAGTTAGCTCGGTGATTCAGAACCGAGTAGA GAGTTTATCGACGAAAGTGGCTTGGAAAGAAGGGGAGGTTAAAGATTTGTTACAGATATTAATGGAGATCAGAGATAGTTCGGGTTCAGAATCGTCCTTA AACTCGATTACCCACTTCAAAGCTCTTATTCAGGACATTGTCATTGGTGGCAACGACAGCGTGTCGAGCACGATCGAATGGGCAATGACACACCTCCTAA GATCGAAAAACTCAATGCACAAAGTCAAGCAGGAACTAGACCGAATCGTCGGACTCAACAATCTCGTTGAGGACCACCATTTACGTAGCCTGCACTACTT AGACGCCGTTATTAAGGAGGCATGCCGGTTGCACCACTCCATCCTGCAACGAACCTCAAACCGACCATGTACAATAGGTGGGTACTCGATTCCCGAGGGA ACCCAAGTCTTGGTCAACGCGTGGGCCATTCAGAGGGACCCTAAAGTGTGGGACCGGCCAACGGAGTTTCGACCCGATAGGTTTTTGGACGATGATCAGA GGTTTGACTACATGGGGAGCAACAGTAGTTTTCGGTTTATTCCGTTCGGGTCGGGTCGGCGGGTTTGTGCCGGGGTTAATTTGGCTGAGAGGATGCTGAA ATACGTGTTGGCTTCGTTGTTGCATACGTTTGAGTGGGAGTTGGTTGAGGGGGCAAAAGAGGTGGACATATCGGATGAGTTTAATATATTTATTAGGAAG AAAAATAGGTTAATTATTGTGCCGAGGATTAGGCTTTCTAGTACTAAGTTACTTGCCTAG
AA sequence Show only first row Show all	>Lus10024573 pacid=23161567 polypeptide=Lus10024573 locus=Lus10024573.g ID=Lus10024573.BGIv1.0 annot-version=v1.0 MYPWKDYEIPLPPLHISILIFLMICYISYLAKQSTKNPRSPTLPPGPIGLPVVGYAMFLKPNQIHTQLAQLASTHGPIFKFWAGAQLSVVITSPTLAKQV LRQNDSIFYQRKIPIAAEVASYNGSDLACLPMGPGWISMRKVLMREVISNSSLDRCYPLRRRVVVAAMREVGKEVGKPVDVLELAFKTVVDATVAMVWGS GGGDYDCRREEVREVNKKIMELVGKPNASDVFPLLARFDLQGIEREAREAGRRFDRIVSSVIQNRVESLSTKVAWKEGEVKDLLQILMEIRDSSGSESSL NSITHFKALIQDIVIGGNDSVSSTIEWAMTHLLRSKNSMHKVKQELDRIVGLNNLVEDHHLRSLHYLDAVIKEACRLHHSILQRTSNRPCTIGGYSIPEG TQVLVNAWAIQRDPKVWDRPTEFRPDRFLDDDQRFDYMGSNSSFRFIPFGSGRRVCAGVNLAERMLKYVLASLLHTFEWELVEGAKEVDISDEFNIFIRK KNRLIIVPRIRLSSTKLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	0	1
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	1.0	0.8543
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	3.9	0.8065
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042641 [exp]	7.5	0.7968
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	9.2	0.8439
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	13.6	0.8480
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10032674 [exp]	14.4	0.7865
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	15.2	0.7485
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10015136 [exp]	19.4	0.7723
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032747 [exp]	20.3	0.8044
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	20.4	0.7963

Compare expression of checked genes

Lus10024573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.