Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 249 / 1e-77 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 246 / 1e-76 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12310 204 / 2e-60 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G12330 192 / 5e-56 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT5G44620 189 / 1e-54 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 180 / 2e-51 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 179 / 2e-50 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 160 / 4e-44 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G04330 144 / 2e-38 Cytochrome P450 superfamily protein (.1) AT2G45550 126 / 9e-32 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032211 [exp] 610 / 0 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024578 [exp] 503 / 2e-176 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 482 / 4e-168 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 470 / 5e-164 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 466 / 4e-162 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 425 / 5e-146 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 422 / 3e-144 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10035196 [exp] 337 / 4e-113 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 328 / 3e-109 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 298 / 3e-96 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 259 / 2e-81 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 257 / 1e-80 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 241 / 8e-74 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.006G058200 [exp] 163 / 5e-45 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G049800 [exp] 154 / 7e-42 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.007G016400 [exp] 153 / 1e-41 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.001G167900 [exp] 151 / 8e-41 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.005G117500 [exp] 150 / 2e-40 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.012G089900 [exp] 150 / 3e-40 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024575 pacid=23161561 polypeptide=Lus10024575 locus=Lus10024575.g ID=Lus10024575.BGIv1.0 annot-version=v1.0 ATGGAGTCATGGTGGTGGAAGGATTCGCTTTTCGTGGCTTCTATCCTCATCGTGGTATCGATACCGGTGGTATGGTTACTACTGAAGAGAGCAGCCGACA AAACGTTGCCACCGGGTCCACGAGGGTTGCCAATAGTCGGGTATCTGCCATTTCTAAGCACCCAACTCCACAAGAGCTTCGCGGAGCTGGCTGAACTCTA CGGCCCTGTCTACAAGCTATGGCTCGGATGCAAAATGTACGTGGTGATCACCTCGCCGTCACTAGCTAAAACAATTCGAGACCAGGTCGTAACGTTTACA GATCGTGACCCGCTTATTGCTTCTAAAATCATCAGCTATGGTGGGAGTGACGTTGCATTCTCCTCCTACTGTCCTGACTGGAGAAAGCTGCGTAAGGTGT TCGTGCACGAACTTCTTAGCAGTTCAAGGCTCGAAGGTTCATACTTGCTGAGGAAGAAGGAAGTCGAGAGGGGTATTAAAGATGTGTATGAGAAAAGAGG TAAAGCTTTGGACTTAGGCCAGTTGGTGTTCATCACAGTATCAAACACTGTCCTGAGCATGCTTTTGGGGTGCACGGTCCATGGAGACGAAGGGGAGACG TTGTATTCAAAGATTCGGGAATTGGCGGATGAATTTCTGGTGCTACAGTCAACACTAAACATCTCGGATCTAATTCCTGCACTCGCTAGATTCGAGTTGC AGGGTTTGGAGATGAAAGCCAGGCAGGCGCGGCAGAGATTTGACTCGATTCTCGGTTACATAATCGAGAAACGAAGGAAGCTGGTTTCGGCTAGGGGAGG TGATGTCAATAAGACAACAAAGGACTTCTTGCAGATTCTACTAGACCTAAACAGCAATGGAGATGCTGCTGAATCAATTACAGACAACCAACTCAAAGGG ATTCTCGTGGACGCGATTATCGGTGGAACAGACACGACATCAACGACGATAGAGTGGACGATGGCGATGCTGATGCAAAATCCAGATGCGATGCGAAAGG TCTACAAGGAACTAGACGAGGTAGTAGGAAGAAGCAACAGGAGGGTTTGTGCAGGGCTGCCAATGGCGGAGAAGATGCTGAAATACGTTCTGGCATCGTT GCTCCACTCGTTCGAGTGGAAACTCGCACTCGGGACAGAGGTGGATTCCACAGATAAATATGGAATCGTCTTGAGGCTAGAGAAACCGTTAGTTCTTGTC CCTTCACCAAAGTTAGTCAATCCAGATCTGTACTAG
AA sequence Show only first row Show all	>Lus10024575 pacid=23161561 polypeptide=Lus10024575 locus=Lus10024575.g ID=Lus10024575.BGIv1.0 annot-version=v1.0 MESWWWKDSLFVASILIVVSIPVVWLLLKRAADKTLPPGPRGLPIVGYLPFLSTQLHKSFAELAELYGPVYKLWLGCKMYVVITSPSLAKTIRDQVVTFT DRDPLIASKIISYGGSDVAFSSYCPDWRKLRKVFVHELLSSSRLEGSYLLRKKEVERGIKDVYEKRGKALDLGQLVFITVSNTVLSMLLGCTVHGDEGET LYSKIRELADEFLVLQSTLNISDLIPALARFELQGLEMKARQARQRFDSILGYIIEKRRKLVSARGGDVNKTTKDFLQILLDLNSNGDAAESITDNQLKG ILVDAIIGGTDTTSTTIEWTMAMLMQNPDAMRKVYKELDEVVGRSNRRVCAGLPMAEKMLKYVLASLLHSFEWKLALGTEVDSTDKYGIVLRLEKPLVLV PSPKLVNPDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44620		CYP706A3	"cytochrome P450, family 706, ...		Lus10024575 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	4.2	0.7860
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	7.2	0.7772
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	18.6	0.7667
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	19.1	0.7239
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	28.2	0.7164
					Lus10037345 [exp]	30.6	0.6998
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10005044 [exp]	32.4	0.6451
AT3G04550			unknown protein		Lus10032342 [exp]	32.7	0.6232
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	33.2	0.7246
AT4G15040			Subtilisin-like serine endopep...		Lus10028843 [exp]	34.4	0.6168

Compare expression of checked genes

Lus10024575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.