Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 420 / 7e-143 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 410 / 4e-139 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 375 / 2e-125 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 373 / 2e-124 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 364 / 6e-121 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 350 / 3e-115 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 348 / 3e-114 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 301 / 1e-96 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G04330 266 / 3e-83 Cytochrome P450 superfamily protein (.1) AT3G61040 251 / 2e-77 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032213 [exp] 815 / 0 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 743 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 738 / 0 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032211 [exp] 726 / 0 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032026 [exp] 689 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 680 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 594 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024580 [exp] 495 / 9e-174 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) Lus10035196 [exp] 486 / 1e-170 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 504 / 2e-175 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 451 / 1e-154 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.003G114400 [exp] 446 / 2e-152 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 432 / 9e-147 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.013G073300 [exp] 282 / 3e-89 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.009G069100 [exp] 274 / 5e-86 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 273 / 7e-86 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 274 / 1e-85 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G016400 [exp] 273 / 1e-85 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G084200 [exp] 271 / 6e-85 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024577 pacid=23161508 polypeptide=Lus10024577 locus=Lus10024577.g ID=Lus10024577.BGIv1.0 annot-version=v1.0 ATGGATTCGCTCGTCGTGGTGCTTTCTATCCTCGTCGTGGTATCGATCCCGGTGTTATGGTCATTACTCAAGAGAGCAGCCGACGAGAAGTCGCCTCCGG GTCCACTAGGGTTGCCTATAGTTGGCTACTTACCATTTCTCAGCACCCAACTCCACAAGAGCTTCGGGGAGCTCGCTGAACTCTACGGCCCTATCTACAA GCTCTGGCTCGGAAGCAAAATGTACATAGTGATCGCCTCGCCAAAACTGGCTAAACAAATCAGAGACCATGTCCTAACGTTTACAGATCGGGACCCGCAG ATTGCTTCCAAAATCATCAGCTATGGTGGGAGTGACGTAGCCTTCTCCACGTACGGTCCTGACTGGAGAAAGCTACGGAAGGTTTTCGTGCATGAACTGC TGAGCAGTTCGAGGCTCGAAGGTTTGAACTTGCTGAGGAAGAAGGAAGTTGAGAGCGGTGTTAAGGTTGCGTATGAGAAACGAGGCAAAGTTTTGGACTT TGGGGAGTTGGTGTTTATGACAGTATCAAACACTGTCCTGAGCATGCTCTGGGGAAGCACTGTGAATGGAGAAGAAGTGGAGATGTCGCTTTCGGAGATT CGGAAACTGGCAGATGAATACAATGTGCTAATGTCATCACCAAACATCTCGGACGTGATTCCGGCGCTAGCTAGATTTGATTTGCAGGGGATAGAGAGGA AAACCAGAAAGGCTCAGCAGAGTTTCGATCGGATTTTGAGTTCCATAATCAATGAGAGGAGGAAGCTGGGAAGTGAAGTGAAAGAGACCAAGGACTTCTT GCAGATTCTACTAGACCTAAACAGCAAGGGAGATGCTGCTGCTTCAGTTACAGACGACCAACTCAAAGGGATTCTTCTGGACGTTATTATCGGGGGAACA GACACAACATCAACGACGATAGAGTGGACGATGGCAATGTTGATGCAACATCCCGATGCAATGCAAAACGTCTGCAAAGAACTAGATGAGGTAGTAGGAA GAAGCAACAATGTTGAGGAGTTGCATCTGCCAAAGCTACGCTACTTGGACGCAGCTGTTAAGGAATCGCTCCGCCTGCATCCGGCAGTGCCTATGCTGGC ATTACGTTGCCAGTCCCGGGACTACAGACTAAGCAAATACATCGTTCCAAAAGGAGTTACAGTCATCGTCAACACCTTCGCAATCCAAAGGGATCCACAG CTCTGGGCCAGTCCGCTAGAATTCAGACCCGAAAGGTTCCTAGACGAGAGTGCTACAGCCAAGTTCAATTACTTGGGCAGCAGTTCGCAATATTTCCCAT TTGGAATGGGAAGGAGGGTCTGTGCAGGGCTTCCGATGGCAGAGAAGATGCTGAAGTACGTTCTGGCATCGTTGCTCCACTCGTTCGAATGGAGACTAGC GAAGGGGACGAAGGTGGATTTGACGGAAAAGTTTGGAATTGTTTTCAAGTTAGAGAAACCGTTGATTCTTGTCCCTACGCCGAAGTTGGCCGACTCAGAT CTATACTAA
AA sequence Show only first row Show all	>Lus10024577 pacid=23161508 polypeptide=Lus10024577 locus=Lus10024577.g ID=Lus10024577.BGIv1.0 annot-version=v1.0 MDSLVVVLSILVVVSIPVLWSLLKRAADEKSPPGPLGLPIVGYLPFLSTQLHKSFGELAELYGPIYKLWLGSKMYIVIASPKLAKQIRDHVLTFTDRDPQ IASKIISYGGSDVAFSTYGPDWRKLRKVFVHELLSSSRLEGLNLLRKKEVESGVKVAYEKRGKVLDFGELVFMTVSNTVLSMLWGSTVNGEEVEMSLSEI RKLADEYNVLMSSPNISDVIPALARFDLQGIERKTRKAQQSFDRILSSIINERRKLGSEVKETKDFLQILLDLNSKGDAAASVTDDQLKGILLDVIIGGT DTTSTTIEWTMAMLMQHPDAMQNVCKELDEVVGRSNNVEELHLPKLRYLDAAVKESLRLHPAVPMLALRCQSRDYRLSKYIVPKGVTVIVNTFAIQRDPQ LWASPLEFRPERFLDESATAKFNYLGSSSQYFPFGMGRRVCAGLPMAEKMLKYVLASLLHSFEWRLAKGTKVDLTEKFGIVFKLEKPLILVPTPKLADSD LY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024577 [exp]	0	1
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023525 [exp]	2.4	0.8524
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042693 [exp]	3.2	0.8049
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	3.6	0.8699
					Lus10009381 [exp]	5.3	0.8261
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	9.9	0.8187
					Lus10014003 [exp]	11.6	0.8055
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	13.0	0.8128
					Lus10004635 [exp]	14.7	0.7706
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10016742 [exp]	17.5	0.8234
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	18.9	0.8322

Compare expression of checked genes

Lus10024577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.