Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 412 / 3e-139 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 408 / 8e-138 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12330 373 / 5e-124 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 364 / 2e-120 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 358 / 3e-118 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 344 / 1e-112 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 343 / 1e-111 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 295 / 1e-93 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G04330 254 / 3e-78 Cytochrome P450 superfamily protein (.1) AT2G45560 249 / 3e-76 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032214 [exp] 929 / 0 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032211 [exp] 779 / 0 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032213 [exp] 764 / 0 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024577 [exp] 752 / 0 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 717 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 709 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 627 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024580 [exp] 520 / 0 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) Lus10035196 [exp] 511 / 6e-180 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 548 / 0 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 456 / 3e-156 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 445 / 4e-152 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 427 / 3e-144 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 286 / 1e-90 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.013G073300 [exp] 280 / 1e-87 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.012G137200 [exp] 277 / 8e-87 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.005G037201 [exp] 274 / 1e-85 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 274 / 2e-85 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.009G069100 [exp] 273 / 3e-85 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024578 pacid=23161599 polypeptide=Lus10024578 locus=Lus10024578.g ID=Lus10024578.BGIv1.0 annot-version=v1.0 ATGTCTCACTTGCAGAATACAACATTACCTCATGATTCCCTGATAATGGGGTCATGGTGGTGGGCAGTAAGCAGCGATGGATCGCTGCAAGTGGAAGTTG TTATGGCAGCTCTCGTCATGGTATCGATCCCGGTGATATGGTCATTACTCGAGAGAGCAGCCGACGAGAAGTTGCCACCAGGCCCACGAGGATTCCCAAT AGTTGGCTACCTGCCGTTTCTTAGCACCGAACTCCACAAGAGCTTCACAGAGCTGGCAGAAGTCTACGGCCCTGTCTACAAGCTCTGGCTCGGAAGCAAA ATGTACGTGGTGATTGGCGCACCAACACTAGCTAAACAAGTTCGAGAACAGGTCGTAACATTTTCAGATCGTGACCCGCTGATTGCTTCCAAAATCATCA GCTATGGTGGCAATGACATCGGTTTCAGCTCACACAGTCCTAACTGGAGAAAGCTGCGCAAGACATTCGTTCGCGAACTTTTGTGCAGTGCAAGACTTGA AAGTTCCTATGTGCTGAGAAAGAGGGAAGTTCAGAAAACTGTTAAGGATGTTTACCAGAAAAAAGGTAAAGCTTTGGACTTTGGTCAGTTGGTGTTTATG ACAGTATCAAACACTGTCCTCAGCATGCTCTTGGGATGCACTGTCCATGGAGACGAAGGGGTGATCTTCTTTTCGAAGATTCGGAAATTGGTGGATGAAT TCAATGTGCTACAGTCAACACCAAACATCTCAGACCTAATTCCTGCACTTGCCAGATTTGACTTGCAGGGGATAGAGAGGAAAACCACACAGGCACAGCA GAGTTTCGATCGAATTCTCGATTCGATAATCAATGAGAGGAGGAAGCTGAGAGGTGAAGTGATAGAAACAAAGGACTTCTTGCAGATTCTACTAGACCTA AACAGCAATGGAGATGCTGCTTCATCAATTACAGACGACCAACTCAAAGGGATTCTGGTGGATACGATTATAGGTGGAACAGACACAACAGCAACGACGA TAGAGTGGACGATGGCAATGCTGATGCAACATCAAGACGCAATGCAAAAGATCTACAAAGAACTAGATGAGGTAGTAGGGAGAAGCAATACTGTCGAAGA GTTGCATCTGCCGAAGCTACGCTACTTGGACGCAGTTGTAAAGGAAACATTACGCCTGCATCCAGCGGTGCCTATGCTCGTCATGCGTTGCCCATCCCAG GACTGCAAACTAAGCGAATACACCATTCCAAAAGGCGTTACAGTCATCATTAACGCCTATGCAATCCACAGGGATCCACAGGTCTGGACCAGTCCTCTGG AATTCCGACCTAACAGGTTCCTAGACAAGAATGCAACCAAGTTCGATTACTTGGGGAATAGTGACCGGTATTTCCCGTTTGGGACAGGAAGGAGAGTCTG TGCAGGGCTTCCGATGGCCGAAAAGATGCTGAAATACGTACTGGCATCGTTGCTCCACTCGTTTGAATGGAGACTAGCACACGGCACAGAGGTGGTGGAT TCGACAGATAAGTTTGGAATTGTTTTGAAGTTAGAGAAACCATTGATTCTTGTTCCTAGGCCGAAGGTAGCCAATCCAGATCTATACTAG
AA sequence Show only first row Show all	>Lus10024578 pacid=23161599 polypeptide=Lus10024578 locus=Lus10024578.g ID=Lus10024578.BGIv1.0 annot-version=v1.0 MSHLQNTTLPHDSLIMGSWWWAVSSDGSLQVEVVMAALVMVSIPVIWSLLERAADEKLPPGPRGFPIVGYLPFLSTELHKSFTELAEVYGPVYKLWLGSK MYVVIGAPTLAKQVREQVVTFSDRDPLIASKIISYGGNDIGFSSHSPNWRKLRKTFVRELLCSARLESSYVLRKREVQKTVKDVYQKKGKALDFGQLVFM TVSNTVLSMLLGCTVHGDEGVIFFSKIRKLVDEFNVLQSTPNISDLIPALARFDLQGIERKTTQAQQSFDRILDSIINERRKLRGEVIETKDFLQILLDL NSNGDAASSITDDQLKGILVDTIIGGTDTTATTIEWTMAMLMQHQDAMQKIYKELDEVVGRSNTVEELHLPKLRYLDAVVKETLRLHPAVPMLVMRCPSQ DCKLSEYTIPKGVTVIINAYAIHRDPQVWTSPLEFRPNRFLDKNATKFDYLGNSDRYFPFGTGRRVCAGLPMAEKMLKYVLASLLHSFEWRLAHGTEVVD STDKFGIVLKLEKPLILVPRPKVANPDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024578 [exp]	0	1
AT1G53210			sodium/calcium exchanger famil...		Lus10017657 [exp]	4.5	0.8253
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	4.9	0.8753
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	6.9	0.8753
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	8.5	0.8753
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	9.8	0.8753
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	11.0	0.8753
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	12.0	0.8753
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	13.0	0.8753
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	13.9	0.8753
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	14.7	0.8753

Compare expression of checked genes

Lus10024578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.