Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 317 / 1e-103 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 304 / 7e-99 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 303 / 2e-98 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 300 / 4e-97 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 284 / 5e-91 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 275 / 2e-87 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 276 / 3e-87 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 220 / 2e-66 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45570 204 / 2e-60 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT4G37400 192 / 3e-56 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032215 [exp] 658 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 648 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 616 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10035196 [exp] 515 / 0 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 514 / 1e-180 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 503 / 3e-176 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 483 / 9e-169 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032211 [exp] 480 / 8e-168 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032213 [exp] 478 / 6e-167 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 408 / 3e-139 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 340 / 9e-113 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.003G114400 [exp] 334 / 5e-110 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 324 / 7e-106 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.013G073300 [exp] 231 / 8e-71 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 228 / 1e-69 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G085000 [exp] 226 / 2e-68 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 224 / 4e-68 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 221 / 5e-67 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 212 / 1e-63 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024580 pacid=23161631 polypeptide=Lus10024580 locus=Lus10024580.g ID=Lus10024580.BGIv1.0 annot-version=v1.0 ATGTACCTGGTGGTCGGCTCACCATCGCTAGCTAAAGAAGTTCGCGACCAGGACGTAACATTTTCAGCTCAAGATCCTCCGATTGCTGCGAAGATAATCA CCCACGGTGGGAATGACATCGGGTTCACATCCTACGGTTCCGACTGGAAGAAGCTAAGGAAGATCTTCGTGCGTGAGTTGTTAAGCAATGCCAGGATGGA CGGTTCTTACTTGCTGAGGAAGCAACAAGTTCAGAGGGCTGTTAAGGATGTGTATGAGAAAAGAGGTGAAGAGATGGTGCTACTTGCTGCACCGAACATC TCAGACTTCGTTCCGGGACTTGCCAGGTTTGACTTGCAGGGAATAGAGAAGAGATCCAGGAAGCTGCAACAGGAAATGGATCAATTTTTCAATTCTGTGA TCAGCGAGCGGAGGAAGATGGTTTCGGATTTGGGAGGTGAATTCAAAGATGGGAAGGACTTCTTGCAGATTCTCCTGGATCTCAACAGCCATGGAGGAGA TGCTGCATTGTCAGTCACAGACAGTCAACTCAAGGGCATTCTTTTGGATACGATTATCGGCGGAACAGACACAACAGTAACGACAATAGAGTGGACAATG GCAATGCTGATGCAACATCCAGACGCAATGCAAAAGATCTACAAGGAACTAGACAAGGTAGTAGGAAGAAAAAGCGTAGTCGAAGAGTTACATCTGCCGC AACTACACTACTTGGATGCAGTGATTAAGGAAACATTCCGCCTGCATCCGGCACTGCCGGTGCTGATACCCCGTTGCCCCAGCCAGGACTGCAAACTAGG GGGGTACACCATTCCAAAGGGCATCACTGTATTCATCCACGCTTATGCAATCCACAGGGATTCAAAGCTCTGGACCAAACCTCTGGTATTTAGACCTGAA AGGATCGTAGACAAGAATAATGCGAGCAAGTTGGACCACTTGGGAAACAGTTCAAAGTATTTCCCATTTGGAACAGGGAGGAGAGTCTGTGCAGGGCTTC CAATGGCGGAGAAGATGCTCAAATACGTTCTGGCATCACTGCTCCACTCGTTTGAATGGAAGCTAGCACAGGGGACAGAGGTGGATTTTACGGATAAGTT CGGAATCGTCGTGAAGTTGGAGAAACCGCTAATTCTTGTCCCTACACAAAGCTGGCCAATCCAGATCTTTACTAGAAAAGTAATGAACAACGATGTATTG GAGCAATATTCTTCCCTATTGGTATTTCAGCATTCTTCCAAATAA
AA sequence Show only first row Show all	>Lus10024580 pacid=23161631 polypeptide=Lus10024580 locus=Lus10024580.g ID=Lus10024580.BGIv1.0 annot-version=v1.0 MYLVVGSPSLAKEVRDQDVTFSAQDPPIAAKIITHGGNDIGFTSYGSDWKKLRKIFVRELLSNARMDGSYLLRKQQVQRAVKDVYEKRGEEMVLLAAPNI SDFVPGLARFDLQGIEKRSRKLQQEMDQFFNSVISERRKMVSDLGGEFKDGKDFLQILLDLNSHGGDAALSVTDSQLKGILLDTIIGGTDTTVTTIEWTM AMLMQHPDAMQKIYKELDKVVGRKSVVEELHLPQLHYLDAVIKETFRLHPALPVLIPRCPSQDCKLGGYTIPKGITVFIHAYAIHRDSKLWTKPLVFRPE RIVDKNNASKLDHLGNSSKYFPFGTGRRVCAGLPMAEKMLKYVLASLLHSFEWKLAQGTEVDFTDKFGIVVKLEKPLILVPTQSWPIQIFTRKVMNNDVL EQYSSLLVFQHSSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	0	1
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	1.0	0.9317
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	4.5	0.9297
AT4G31310			AIG2-like (avirulence induced ...		Lus10020179 [exp]	5.3	0.8758
					Lus10039025 [exp]	5.7	0.9249
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	5.9	0.9205
					Lus10000019 [exp]	6.5	0.8921
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	7.3	0.9268
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013581 [exp]	10.5	0.8972
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	10.6	0.9145
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	11.0	0.9179

Compare expression of checked genes

Lus10024580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.