Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 372 / 6e-125 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 369 / 9e-124 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 360 / 3e-120 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 352 / 4e-117 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 343 / 9e-114 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 342 / 3e-113 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 343 / 5e-113 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 271 / 5e-86 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45560 236 / 2e-72 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 235 / 7e-72 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032215 [exp] 761 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 745 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024580 [exp] 654 / 0 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) Lus10035196 [exp] 640 / 0 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 629 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 620 / 0 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 606 / 0 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 594 / 0 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032211 [exp] 593 / 0 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 473 / 3e-164 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 420 / 1e-143 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 406 / 9e-138 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 400 / 1e-135 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.013G073300 [exp] 280 / 2e-89 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 257 / 1e-80 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.018G051300 [exp] 256 / 6e-80 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 248 / 4e-77 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.006G141400 [exp] 249 / 6e-77 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 248 / 2e-76 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024581 pacid=23161523 polypeptide=Lus10024581 locus=Lus10024581.g ID=Lus10024581.BGIv1.0 annot-version=v1.0 ATGTATGTGGTGGTCGGCTCACCGTTGATAGCTAAACAGGTTCGCGACCAGGACGTAACATTTGCAGATCGCGATCCTTCAATTGCTGCGAAGATAATCA CCCATGGTGGGAATGACATCGGGTTCATATCCTACGGTTCCGACTGGAAGAAGCTAAGGAAGATCTTCGTGCGCGAGTTGTTAAGCAATGCCAGGATGGA CGGTTCTTACTTGCTGAGGAAGCAACAAGTTCAGAGGGCTGTTAAGGATGTGTATGAGAAAAGAGGTAAAGCTTTGGACTTTGGCCAGTTGGTGTTCATG ACGGTATCAAACACTGTCCTGAGCATGCTCTGGGGAAGCACGGTCCACGGGGAAGAAGGCGAAATGTTCTTTGCCAAGATTAAGAAGTTGGCAGGTGAAG AGATGGCGCTGCTTGCTGCACCAAACATCTCGGACCTTGTTCCTGCACTTGCCAGGTTTGAATTGCAGGGAATAGAGAAGAAATCCAGGAAGCTGCAGCA GGAAATGGATCAATTTTTCAATTCTGTGATCAGCGAGCGGAGGAAGATGGTTTCGGATTTGGGAGGTGAATTCAAAGATGGGAAGGACTTCTTGCAGATT CTCCTGGATCTCAACAGCCATGGAGGAGATGCTGCATTGTCAATCACAGACGGTCAACTCAAGGGCATTCTTCAAGATACGATTACCGGCGGAACAGACA CAACAGTAACAACGATAGAGTGGACGATGGCAATGTTGATGCAACATCCAGATGCAATGCAAAAGGTCTGCAAAGAACTAGACGAAATAGTAGGAAGAAC AAGCATAGTCGAAGAGTTACATCTGCCGCAACTACACTACTTGGATGCAGTGATTAAGGAAACATTCCGCCTGCATCCACCACTGCCCATGCTGGTTCCG CGTTGCCCCAGCCAGGACTGCAAACTAGGGGGGTACACCATTCCAAAGGGCGTCAATGTATTCATCAACGCTTATGCAATCCACAGGGATCCAAAGCTCT GGACCAACCCTCTGGAATTCAGACCTGAAAGGTTCTTAGACGAGAATGCAGGCAACAAGTTGGACTATTTGGGCAACAGTTCAAAGTATTTCCCATTTGG AACAGGGAGGAGAGCCTGTGCAGGGATTCCAATGGCGGAGAAGATGCTCAAATACGTTCTTGCATCGCTTCTACACTCGTTTGAATGGAAGCTTGCAAAG GGGAAAGAGGTGGATTTGACAGATAAGTTTGGAATCGTCGTGAAGATGGAGAACCCGCTGATTCTTGTGCCTGCACCAAAGCTACCAAATCCAGATCTTT ACTAG
AA sequence Show only first row Show all	>Lus10024581 pacid=23161523 polypeptide=Lus10024581 locus=Lus10024581.g ID=Lus10024581.BGIv1.0 annot-version=v1.0 MYVVVGSPLIAKQVRDQDVTFADRDPSIAAKIITHGGNDIGFISYGSDWKKLRKIFVRELLSNARMDGSYLLRKQQVQRAVKDVYEKRGKALDFGQLVFM TVSNTVLSMLWGSTVHGEEGEMFFAKIKKLAGEEMALLAAPNISDLVPALARFELQGIEKKSRKLQQEMDQFFNSVISERRKMVSDLGGEFKDGKDFLQI LLDLNSHGGDAALSITDGQLKGILQDTITGGTDTTVTTIEWTMAMLMQHPDAMQKVCKELDEIVGRTSIVEELHLPQLHYLDAVIKETFRLHPPLPMLVP RCPSQDCKLGGYTIPKGVNVFINAYAIHRDPKLWTNPLEFRPERFLDENAGNKLDYLGNSSKYFPFGTGRRACAGIPMAEKMLKYVLASLLHSFEWKLAK GKEVDLTDKFGIVVKMENPLILVPAPKLPNPDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024581 [exp]	0	1
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10035854 [exp]	2.0	0.9047
					Lus10003132 [exp]	3.0	0.9130
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	3.0	0.9158
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	3.7	0.9143
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	9.2	0.9031
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	10.7	0.9019
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	12.5	0.8766
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	13.1	0.8868
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	13.7	0.8816
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10026722 [exp]	15.0	0.8554

Compare expression of checked genes

Lus10024581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.