Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 598 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 594 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 593 / 0 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 583 / 0 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 567 / 0 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 542 / 0 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G59590 275 / 1e-87 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46660 270 / 1e-85 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G46670 266 / 4e-84 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59580 265 / 1e-83 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032220 [exp] 918 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 743 / 0 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 721 / 0 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 629 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 578 / 0 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10013924 [exp] 565 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 552 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10000993 [exp] 549 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 548 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098300 [exp] 676 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 633 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 620 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 620 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 605 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 595 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 593 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 592 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 589 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 580 / 0 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10024583 pacid=23161603 polypeptide=Lus10024583 locus=Lus10024583.g ID=Lus10024583.BGIv1.0 annot-version=v1.0 ATGGGCATCGCTGAAACTGATCATCGACGTCCACACGCAGTATGCATACCGTTCCCAGCACAAGGCCACATCAACCCGATGCTAAGGCTAGCCAAACTCC TTCACCAAAAGGGATTCCACGTCACTTTCGTCAACACCGAGTTCAACCACCGTCGCCTCCTCCGATCTCGAGGCTCCGCGGCCTTCGACCACAACTCGAG CCGCTTCCGATTCGAGACCATCCCCGACGGGCTACCACCCTCGGATGAGGATGCGACCCAAGACGTTCCGTCTATATGTGAGTCCACCAGGAAGACTTGC TTGGGTCCTTTTAGACGGCTCGTTTCGAAGCTAAACGACGATGTATCTGTACCGCGGGTTACTTGTATAGTTTCTGATTGTATCTTGGGGTTCACGGTTG AAGTTGCTAAGGAGCTTGCGATTCCTAATGTGATGTTTTGGACGGCTAGTGCTTGTGGATACTTGGGGTATCTCAATTACAGCAAACTTCTCGAGAAGGG CATTTTCCCACTCAAAGATGCAAGTATGATAACCAATGGACATCTGGAAACCACAATTGATTGGATCCCTGGCATGGAAGGCATTCCATTGAAGTATATG CCAACCTTTCTACGTACGACGGACCCGACCGACGTCATGTTCCATTTCGCCATGGGACAAGTCGAAAATTCTCGAAACGCCTCCGCAATTGTACTCAACA CGTACGATACGCTAGAAGAGGATGTCCTTCGGTCTCTTTCGCGTACCTTGGCTCCGCCAATATACACACTCGGCCCTCTCGACCTCATGACCCTCCGTGA AAACGACCTCGACTCCCTCGGGTCGAACCTGTGGAAAGAAGAATCCGGTTGCCTCGAATGGCTCGACCAGAAAGAACCCAACTCGGTCGTTTACGTGAAT TTCGGAAGTATCACGGTCATGACACCTCATCAATTGGTCGAGTTCGCTTGGGGACTAGCCAAGAGCGAAAAGACGTTCTTATGGGTCATCAGGCCTGACC TTGTTAAGGGCGAGTCCGCGATTCTTCCCGGGGAATTTTCGGACGAGGTGAAAGACAGGGGAATGTTGGCGAGTTGGTGCCCGCAGGACAGAGTCCTGAA ACACTCTTCCATCGGAGGGTTCCTAACGCATTGTGGGTGGAACTCCACAGTGGAGAGCTTGACTAGTGGCGTGCCGATGATTTGTTGGCCGTTTTTTGCG GAGCAACAGACGAATTGTTGGTTTGTTTGTAACAACTGGAGGGTTGGACTTGAGATTGATAGTGATGTTAAGAGGGATGAGATTGATGAGCTTGTTAGGG AGTTTATTGATGGGGTGAAGGGGAAAGAGATGAAAGAAAGAGCAATGGAGTGGAAGAAATTGGCTGAGGAGGCTGCTCAGTGTGAGACTGGACATGCTTA CTTGAACTTGGAAAGTGTGATTAATAATGTTCTTCTTAAGTCCATGGAATGTTGA
AA sequence Show only first row Show all	>Lus10024583 pacid=23161603 polypeptide=Lus10024583 locus=Lus10024583.g ID=Lus10024583.BGIv1.0 annot-version=v1.0 MGIAETDHRRPHAVCIPFPAQGHINPMLRLAKLLHQKGFHVTFVNTEFNHRRLLRSRGSAAFDHNSSRFRFETIPDGLPPSDEDATQDVPSICESTRKTC LGPFRRLVSKLNDDVSVPRVTCIVSDCILGFTVEVAKELAIPNVMFWTASACGYLGYLNYSKLLEKGIFPLKDASMITNGHLETTIDWIPGMEGIPLKYM PTFLRTTDPTDVMFHFAMGQVENSRNASAIVLNTYDTLEEDVLRSLSRTLAPPIYTLGPLDLMTLRENDLDSLGSNLWKEESGCLEWLDQKEPNSVVYVN FGSITVMTPHQLVEFAWGLAKSEKTFLWVIRPDLVKGESAILPGEFSDEVKDRGMLASWCPQDRVLKHSSIGGFLTHCGWNSTVESLTSGVPMICWPFFA EQQTNCWFVCNNWRVGLEIDSDVKRDEIDELVREFIDGVKGKEMKERAMEWKKLAEEAAQCETGHAYLNLESVINNVLLKSMEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10024583 [exp]	0	1
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	1.4	0.9227
AT3G48660			Protein of unknown function (D...		Lus10037036 [exp]	2.2	0.9187
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10019850 [exp]	3.9	0.9336
AT3G22490			Seed maturation protein (.1)		Lus10042604 [exp]	6.0	0.8833
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10004677 [exp]	8.1	0.9216
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	9.2	0.9209
AT5G12010			unknown protein		Lus10024997 [exp]	15.0	0.8952
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	15.2	0.9018
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	18.4	0.9020
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	23.7	0.8816

Compare expression of checked genes

Lus10024583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.