Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 552 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 550 / 0 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 546 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 526 / 0 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 521 / 0 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 502 / 1e-175 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G46670 263 / 7e-83 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G46660 263 / 1e-82 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G11340 260 / 1e-81 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G59590 258 / 8e-81 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032220 [exp] 706 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 695 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 660 / 0 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 567 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 557 / 0 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10000993 [exp] 514 / 2e-180 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013924 [exp] 514 / 3e-180 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 511 / 2e-179 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013923 [exp] 501 / 5e-175 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098300 [exp] 598 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 581 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 559 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 554 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 543 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 539 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 539 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 536 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 532 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.005G073766 [exp] 530 / 0 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10024584 pacid=23161556 polypeptide=Lus10024584 locus=Lus10024584.g ID=Lus10024584.BGIv1.0 annot-version=v1.0 ATGGGTAGCTTGTACAACGAACGTCCACACGCAGTATGCGTACCATTCCCAGCACAAGGCCACATCAACCCGATGCTAAAGCTAGCCAAACTCCTTCACC AAAAGGGATTCCACATCACCTTCGTCAACACCGAGTTCAACCACCGCCGCCTCCTCCGATCTCAAGGCCCCACTGCCTTCGACAACCTCCCCGATCACTT CCGATTTGAGACAATCCCCGACGGGCTCCCACCTACCGAGGAAGAGGACTCAACCCAAGACATTCCGTCTCTGGGAGAGTCCACCAGGAGGACTTGTGAG GGTCCATTTAAACGGCTCGTTTCGAAGCTAAACGACGCCGTGGAGGCCTCACCACCGGTTACTTGCATAGTTTCTGATTTAATAATGGGATTCACTATGC AAGTGGCTAAGGAACTTGGGATCCCTAATGTTTTGTTTTGGACGGCTAGTGCTTGTTCGTTCCTGGGTTACGCCAATTTCCCCGCGCTTGTCGAAAGGGG CATTGTGCCCCTCAAAGATTCTCCCATTGATTGGATCTCCGCCATGGAAGGCATCACGTTGAAGTACATGCCAAGCTTTCTACGCATAACAGATCCAAAC GACGTCATGTTCAAGTTCATCCTGGAAGAAGGCGAAAACGCTCAAAACGCCACCGCATTGATCGTCAACACATTCGAGAAACTCGAACACGACGTCGTAC AGTCCCTTTCGTCCGCCTTCCCCGTACCGATCTACACGCTCGGTCCCCTTAACCTCATGAATAACATCCAACAAGAAAGTGATGATGATCAGTTATTGGA CTCCCTCAGATTGAACCTATGGAAAGAACAATCCGGTTGCCTCGAATGGCTCGACCGAAAGGAACCCAACTCGGTCGTGTACGTAAATTTCGGGAGCATC GCGGTCACGACACCTCATCAACTGGTCGAGTTCGCTTGGGGGCTAGCGAAAAGCGAAAAAACATTTCTATGGGTCATCAGGCCTGACCTTGTTAAAGGCA AGTCAGCGATCCTTCCGGACGAGTTTTCCGACGAGGTTAAAGAAAGGGGGTTGTTGGTGGGGTGGTGCCCTCAGGATAAGGTGCTTAAACACCCCTCTAT CGGAGGGTTCCTGACGCACTGTGGATGGAATTCGACGATGGAGAGCTTGACAAGTGGCGTGCCGATGATTTGCTGGCCGTTTTTCGCGGACCAGCAGACG AATTGTTGGTTTGTTTGTTACAAGTGGGGGGTTGGGCTTGAGATTGATAGTGATGTCAAGATGGATGAGGTTGACGGGCTTATTAGAGAGTTGATGGATG GGGTGAAGGGGGGAAAGATGAAAGAAAGAGCAATGGAGTGGAAGAAATTGGCTGAGGAGGCTGCTCATGGTGGGATTGGAGAGGGTTATTTGAACTTGGA GAATGTAATTAGTAAGCTTCTCATTGGCTCTAAATGA
AA sequence Show only first row Show all	>Lus10024584 pacid=23161556 polypeptide=Lus10024584 locus=Lus10024584.g ID=Lus10024584.BGIv1.0 annot-version=v1.0 MGSLYNERPHAVCVPFPAQGHINPMLKLAKLLHQKGFHITFVNTEFNHRRLLRSQGPTAFDNLPDHFRFETIPDGLPPTEEEDSTQDIPSLGESTRRTCE GPFKRLVSKLNDAVEASPPVTCIVSDLIMGFTMQVAKELGIPNVLFWTASACSFLGYANFPALVERGIVPLKDSPIDWISAMEGITLKYMPSFLRITDPN DVMFKFILEEGENAQNATALIVNTFEKLEHDVVQSLSSAFPVPIYTLGPLNLMNNIQQESDDDQLLDSLRLNLWKEQSGCLEWLDRKEPNSVVYVNFGSI AVTTPHQLVEFAWGLAKSEKTFLWVIRPDLVKGKSAILPDEFSDEVKERGLLVGWCPQDKVLKHPSIGGFLTHCGWNSTMESLTSGVPMICWPFFADQQT NCWFVCYKWGVGLEIDSDVKMDEVDGLIRELMDGVKGGKMKERAMEWKKLAEEAAHGGIGEGYLNLENVISKLLIGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	0	1
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	1.0	0.9691
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	1.7	0.9559
					Lus10000749 [exp]	2.2	0.9351
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	3.5	0.9577
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	4.2	0.9138
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	5.7	0.9420
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	8.0	0.8965
AT5G24620			Pathogenesis-related thaumatin...		Lus10023896 [exp]	8.5	0.9322
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	9.5	0.9134
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	9.5	0.9275

Compare expression of checked genes

Lus10024584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.