Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 328 / 5e-111 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 321 / 4e-108 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 317 / 1e-106 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 315 / 2e-105 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G22710 315 / 2e-105 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 315 / 5e-105 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G44620 310 / 8e-104 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT2G40890 213 / 3e-66 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT2G45550 213 / 4e-66 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 213 / 4e-66 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032223 [exp] 474 / 5e-168 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032222 [exp] 439 / 2e-154 AT4G12300 582 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 275 / 6e-90 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024572 [exp] 266 / 2e-88 AT4G12320 345 / 1e-115 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032215 [exp] 265 / 1e-85 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10028914 [exp] 260 / 4e-84 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024580 [exp] 257 / 4e-84 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) Lus10024578 [exp] 259 / 9e-84 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10004331 [exp] 259 / 2e-83 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118500 [exp] 372 / 3e-128 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 347 / 1e-117 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 271 / 2e-88 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118400 [exp] 266 / 2e-86 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.018G051300 [exp] 224 / 2e-70 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 220 / 1e-68 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.009G069100 [exp] 218 / 6e-68 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 215 / 4e-67 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G033300 [exp] 215 / 7e-67 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.007G085000 [exp] 215 / 2e-66 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024585 pacid=23161531 polypeptide=Lus10024585 locus=Lus10024585.g ID=Lus10024585.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGATCGACCGATTTCTTGGAGTTTCTGTTGAAGCTTGTGAAGGAGGAAGGCGGAGATGCCAAGACTCCTCTCACCATGACCCATCTCAAAG CCCTCCTCATGGACATGATAGTGGGAGGCACAGACACATCAGCAAACTCGATCGAGTTCGCAATGGCAGAAGTGCTCAACAACCCAGAAGTCCTCAAGAG GGCACAAGAAGAGCTAGACCAAGTAGTAGGGAAAGAGAGCATAGTTGAAGAGTCGCACATCCACAAGCTCCCTTACTTGAATTGCATCATGAAGGAGTCA CTAAGGCTCCACCCGGCACTCCCTCTACTCGTCCCGCATTGCAACCCTAGCCAGGACTGCGTCGTGGGAGGCTACACCATCCCCAAGGGATCACGGATCT TCGTGAATGTGTGGTCCATCCATAGGGACCCTTCTGTGTGGAAGGACGACCCGTTGGAGTTCAAGCCTGAGAGGTTTGTGGATTCTAGCTTTGACTACAG CGGGAACGACTTGACTTACTTCCCGTTTGGGTCCGGTAGGAGGATATGCGCCGGGATAGCAATGGCGGAGAGGATGTTCTTGTTCTCGCTTGCAACGTTC TTGCACTCGTTCGACTGGAAGCTGCCTCAGGGGAAGAAGAATGTCGACCTCACGGAGAAGTTTGGGATCGTGCTGAAGCTGAAGTCGCCTCTTGTTGCCG TTCCAGTGCCAAGGCTACCGAATTCGTCACAGTACGAGTAG
AA sequence Show only first row Show all	>Lus10024585 pacid=23161531 polypeptide=Lus10024585 locus=Lus10024585.g ID=Lus10024585.BGIv1.0 annot-version=v1.0 MAEGSTDFLEFLLKLVKEEGGDAKTPLTMTHLKALLMDMIVGGTDTSANSIEFAMAEVLNNPEVLKRAQEELDQVVGKESIVEESHIHKLPYLNCIMKES LRLHPALPLLVPHCNPSQDCVVGGYTIPKGSRIFVNVWSIHRDPSVWKDDPLEFKPERFVDSSFDYSGNDLTYFPFGSGRRICAGIAMAERMFLFSLATF LHSFDWKLPQGKKNVDLTEKFGIVLKLKSPLVAVPVPRLPNSSQYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	0	1
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	1.0	0.9553
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	2.0	0.9347
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	2.4	0.9226
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	3.5	0.9084
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10033625 [exp]	4.1	0.8772
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	5.0	0.9070
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	5.5	0.8939
AT5G53750			CBS domain-containing protein ...		Lus10042702 [exp]	5.5	0.9002
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	5.7	0.8911
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	6.9	0.8900

Compare expression of checked genes

Lus10024585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.