Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 251 / 5e-81 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 251 / 1e-80 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12330 241 / 1e-76 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 233 / 1e-73 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 228 / 8e-72 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22690 216 / 4e-67 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 211 / 2e-65 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT3G52970 115 / 1e-29 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45550 111 / 5e-28 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT5G06900 110 / 7e-28 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032223 [exp] 412 / 9e-144 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032222 [exp] 365 / 1e-125 AT4G12300 582 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 177 / 3e-52 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 174 / 2e-51 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024577 [exp] 173 / 7e-51 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 169 / 2e-49 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10028914 [exp] 165 / 1e-47 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10004331 [exp] 163 / 8e-47 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032214 [exp] 160 / 1e-45 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118500 [exp] 298 / 3e-99 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 278 / 1e-90 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 194 / 8e-59 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118400 [exp] 177 / 2e-52 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 144 / 3e-40 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 125 / 3e-33 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 121 / 1e-31 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 120 / 2e-31 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 120 / 3e-31 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.005G029800 [exp] 119 / 7e-31 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10024586 pacid=23161563 polypeptide=Lus10024586 locus=Lus10024586.g ID=Lus10024586.BGIv1.0 annot-version=v1.0 ATGTCGCCGGCGATCCTCATCGTCGCTGCCATCGGGGTATTCTCCCTCCTCTTCCTCTTCACTCGCCGCATCAAAAACTCCCCCAACCCACCTCTCCCGC CAGGCCCACGCGCCTTACCCGTCATCGGAAACCTTGCTTCCTTATCACCGGAGCTCCATTCCTACTTTGGATCCTTAGCCCGAATCCACGGCCCGATCCT CCGCCTCCAATTGGGTCAGAAGCTTGGCATCGTGATCTCCTCTCCCGCCTTAGCCCGGGAGATTCTGAAGGATCAAGACGTCGCCTTTGCCAACCGTGAC GTTCCCGACGTCGCACGCGCCGTTGCGTACGGCGGTAGCGACATCGTGTGGACCCCTTACGGAGCGGAGTGGCGGATGCTGAGGAAAGTCTGCGTGCTGA AGATGCTGAGCAATACGACTCTCGATTCGGTTTATGTGCTCAGACGCCGCGAGCTGCGGCGGACGGTCGGGTTCATGGCGGGCCGGGGTGGGTCAGAGGT TGATTTCGGGGAGCAGATGTTTCTGACGGTGATGAATGTTATCACGAGCATGATGTGGGGCGGAACTGTCGGGGACGGGGAAGAGAGGGAGAAGCTCGGG GCGGAGTTCCGGCGGCTGGTTTCGGAGATCACCGAGCTTTTGGGGTCGCCCAATCTGTCGGATTTTTTTCCGGCATTGTCCCGGTTCGATTTGCAGGTAG GGTACTGGTTACTTTCGGTTGACTCTTTTTAA
AA sequence Show only first row Show all	>Lus10024586 pacid=23161563 polypeptide=Lus10024586 locus=Lus10024586.g ID=Lus10024586.BGIv1.0 annot-version=v1.0 MSPAILIVAAIGVFSLLFLFTRRIKNSPNPPLPPGPRALPVIGNLASLSPELHSYFGSLARIHGPILRLQLGQKLGIVISSPALAREILKDQDVAFANRD VPDVARAVAYGGSDIVWTPYGAEWRMLRKVCVLKMLSNTTLDSVYVLRRRELRRTVGFMAGRGGSEVDFGEQMFLTVMNVITSMMWGGTVGDGEEREKLG AEFRRLVSEITELLGSPNLSDFFPALSRFDLQVGYWLLSVDSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	0	1
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	1.0	0.9553
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	1.4	0.9434
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	5.0	0.9057
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	5.5	0.9052
AT5G03110			unknown protein		Lus10026490 [exp]	6.9	0.9015
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	7.5	0.9180
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024875 [exp]	8.4	0.9047
AT5G61350			Protein kinase superfamily pro...		Lus10021632 [exp]	8.5	0.8789
AT3G51250			Senescence/dehydration-associa...		Lus10034498 [exp]	8.7	0.8411
AT1G47410			unknown protein		Lus10009767 [exp]	9.4	0.9133

Compare expression of checked genes

Lus10024586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.