Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18230 285 / 3e-97 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032224 [exp] 353 / 3e-124 AT4G18230 309 / 1e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352000 [exp] 270 / 2e-91 AT4G18230 272 / 6e-93 unknown protein Potri.002G170700 [exp] 139 / 2e-40 AT4G18230 140 / 1e-41 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF08660 [flax] [poplar] Alg14 Oligosaccharide biosynthesis protein Alg14 like
Representative CDS sequence Show only first row Show all	>Lus10024587 pacid=23161541 polypeptide=Lus10024587 locus=Lus10024587.g ID=Lus10024587.BGIv1.0 annot-version=v1.0 ATGGATATGGAGATGGATAAGGAACATGACTGTTGCTACTCGATTGCTACTGGAATCGCCATCTTCTTACTGATGATTGTAGTTCGAGTGATCCTTGTCC TTTATTGGACTGGAAAACCAATGTCTTCTAAATCTTCAAAGCCACGGAGTACTTTGATTGTTCTAGGTTCAGGAGGCCACACGGCAGAAATGATTGATTT AGTGTCCGGTCTGCGAAAAGATAGGTTCACTCCCAGGTTCTACATAGCTGCTGCCACTGATAATATGAGCCTACAGAAAGCTCGCGTTTTGGAGGACTCG TTAGTTGATGCGAATCAAGAGAAGAATGCACCTGCGCAGTTTATGCAGATATACAGAAGCAGAGAAGTCGGTCAATCATACATTACCTCAATCGGGACAA CCCTTATAGCCATTGCTCACGCATTATGGCTGATGTTCAGAATCAGACCAGAAGTGGTCCTCTGCAACGGCCCCGGAACATGTATTCCTCTGTGTATGAT TGCATTCTTGTTCAAGGTGATGGGAATCCGATGGTCATCGATATTCTACGTCGAGAGCATCGCAAGAGTGAAGAAGCTATCCCTAAGCGGCTTACTTCTA TACAAACTTCACATAGCTGATCGGTTCTTTGTCCAATGGCCCCAACTGCAGAAGAAATACCCACGAGCTCAGTACGTCGGCTGCTTGATTTTGCAGGCAT TGACCCCCCCTTCTCTTAATGTTTTGAGAAATCCAGCTCATGTAACCTGGCATCCACGTTGCAACTGCAAACAAAGAAGGAATCTTTTCTCTGCCCGTAA GTTGACAAATGATGAGGTTTAG
AA sequence Show only first row Show all	>Lus10024587 pacid=23161541 polypeptide=Lus10024587 locus=Lus10024587.g ID=Lus10024587.BGIv1.0 annot-version=v1.0 MDMEMDKEHDCCYSIATGIAIFLLMIVVRVILVLYWTGKPMSSKSSKPRSTLIVLGSGGHTAEMIDLVSGLRKDRFTPRFYIAAATDNMSLQKARVLEDS LVDANQEKNAPAQFMQIYRSREVGQSYITSIGTTLIAIAHALWLMFRIRPEVVLCNGPGTCIPLCMIAFLFKVMGIRWSSIFYVESIARVKKLSLSGLLL YKLHIADRFFVQWPQLQKKYPRAQYVGCLILQALTPPSLNVLRNPAHVTWHPRCNCKQRRNLFSARKLTNDEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18230			unknown protein		Lus10024587 [exp]	0	1
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	3.2	0.7391
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	3.3	0.7668
AT5G13090			unknown protein		Lus10011343 [exp]	4.5	0.6771
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	6.0	0.6594
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	6.0	0.6814
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	9.9	0.6950
AT1G52343			unknown protein		Lus10007686 [exp]	10.8	0.6379
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	11.2	0.6723
AT1G54920			unknown protein		Lus10029936 [exp]	19.4	0.6715
AT1G05270			TraB family protein (.1)		Lus10031571 [exp]	29.0	0.6108

Compare expression of checked genes

Lus10024587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.