Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22670 310 / 1e-101 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G17880 261 / 2e-83 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT4G12400 60 / 2e-09 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 55 / 6e-08 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G04190 50 / 2e-06 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12270 50 / 2e-06 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G23570 45 / 7e-05 SGT1A phosphatase-related (.1.2.3) AT3G04710 45 / 7e-05 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G16620 44 / 0.0002 PDE120, TIC40, ATTIC40 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032227 [exp] 375 / 2e-127 AT4G22670 403 / 2e-138 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10031334 [exp] 260 / 2e-82 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Lus10028919 [exp] 58 / 9e-09 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10018004 [exp] 58 / 1e-08 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10032234 [exp] 57 / 2e-08 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 56 / 3e-08 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 55 / 1e-07 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10042001 [exp] 54 / 2e-07 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10003260 [exp] 52 / 7e-07 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114000 [exp] 324 / 1e-107 AT4G22670 335 / 5e-112 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.001G118900 [exp] 316 / 1e-104 AT4G22670 333 / 3e-111 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.015G036000 [exp] 268 / 6e-86 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.012G045000 [exp] 228 / 3e-71 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.013G042300 [exp] 59 / 4e-09 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G054800 [exp] 58 / 8e-09 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.001G119500 [exp] 52 / 6e-07 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.003G113400 [exp] 51 / 1e-06 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.008G156500 [exp] 50 / 1e-06 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 47 / 1e-05 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024590 pacid=23161590 polypeptide=Lus10024590 locus=Lus10024590.g ID=Lus10024590.BGIv1.0 annot-version=v1.0 ATGGACGCCGTCAAGCTCAAAGAGCTCAAGAACTTCGTCGAACTCTGCAAGTCCAATCCCTCCGTCCTCACCGATCCTTCCCTCTCCTTCTTCCGCGACT ACGTCGAGAGCCTCGGTGGTAAACTGCCTCCCGCTGCTTACTCCTCCGGATCGAGGAGTCATGTAGAGGAAGACAGTGACGAGGAGATTCCTGAGAAGGA ATCACCGACGGTTGAGGAACCGGAGGAGGAAGAGGAGGAGGATGAGATAATCGAGTCGGATGTTGAGCTGGAAGGTGACACTGTCGAGCCTGACAATGAT CCGCCTCAGAAGATGGGAGACTCGTCAGTTGAGGTCAGTGAGGAAAACCGCGATGCTTCACAGGAGGCTAAGGGAAAAGCTATGGAAGCTATCTCTGAAG GTAAGCTGGAGGATGCTATCGAGCATTTGACTGAAGCTATTTTGCTAAATCCATCGTCGGCAATCATGTATGGAACTAGAGCAACTGTTTACATTAAGAT GAAGAAACCGAATGCTGCTATCAGGGATGCCAATGCGGCTCTTGAGGTTGTTGCTTGTCAGATTAATCCGGACTCTGCCAAGGGTTACAAGTCTCGTGGC ATGGCATGTGCATTGCTTGGCCAGTGGGAGGAAGCTGCTAAGGATCTTCATGTAGCGTCGAAGTTGGATTATGATGAGGAGATAAGTGCTGTTCTTAAGA AGGTTGAACCCAACGCACACAAGATTGAGGAGCATCGTAAGAAGTACGATAGGTTGCGTAAAGAGCGAGAGGATAGGAAGGCTGAACGGGACAGACGTCG CAGACGTGCTAAAGCTCAAGCCGAGTATGAAGAGGCGAAGAAGCAAGAGCAATCATCTTCCAGTTCGAGACCAGGAGGTATGCCTGGAGGATTCCCAGGT GGCATGCCCGGAGGCTTCCCTGGCATGCCAGGAGGCTTCCCTGGCATGCCAGGAGGCTTCCCTGGCATGCCTGGAGGCTTTCCTGGTATGCCTGGTGGCT TCCCAGGAGGCATGCCTGCTGGTATGGGTGGAAGCGGCATGCCTGCAGGTATGGGTGGAAGTGGCATGCCTGCTGGTATGGGTGGAAGTGGCATGCCTGG AGCAGGAATGCCTGGAGCAGGAATGCCTGGAAATGTTGATTTCAGCAAAATCCTGAATGACCCTGAATTGATGTCTGCCTTCAGCGATCCAGAGGTTATG GCTGCTCTTCAAGATGTTATGAAGAACCCAGCGAACCTCGCAAAGCACCAGTCCAACCCGAAGGTAGCTCCTGTGATCGCCAAAATGATGAACAAATTCT CCGGCCCCAAGTAA
AA sequence Show only first row Show all	>Lus10024590 pacid=23161590 polypeptide=Lus10024590 locus=Lus10024590.g ID=Lus10024590.BGIv1.0 annot-version=v1.0 MDAVKLKELKNFVELCKSNPSVLTDPSLSFFRDYVESLGGKLPPAAYSSGSRSHVEEDSDEEIPEKESPTVEEPEEEEEEDEIIESDVELEGDTVEPDND PPQKMGDSSVEVSEENRDASQEAKGKAMEAISEGKLEDAIEHLTEAILLNPSSAIMYGTRATVYIKMKKPNAAIRDANAALEVVACQINPDSAKGYKSRG MACALLGQWEEAAKDLHVASKLDYDEEISAVLKKVEPNAHKIEEHRKKYDRLRKEREDRKAERDRRRRRAKAQAEYEEAKKQEQSSSSSRPGGMPGGFPG GMPGGFPGMPGGFPGMPGGFPGMPGGFPGMPGGFPGGMPAGMGGSGMPAGMGGSGMPAGMGGSGMPGAGMPGAGMPGNVDFSKILNDPELMSAFSDPEVM AALQDVMKNPANLAKHQSNPKVAPVIAKMMNKFSGPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10024590 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10019028 [exp]	2.0	0.8962
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	11.2	0.8554
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10025888 [exp]	13.2	0.8314
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011770 [exp]	14.7	0.8197
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	15.6	0.8478
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	18.8	0.8332
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	19.1	0.8185
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10028919 [exp]	19.2	0.8408
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10029934 [exp]	20.0	0.7542
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	22.4	0.7037

Compare expression of checked genes

Lus10024590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.