Plant FIBer expression Database

Lus10024592 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G62780 292 / 1e-100 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032229
[exp]
433 / 3e-155 AT1G62780 324 / 2e-112 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G119100
[exp]
305 / 1e-105 AT1G62780 318 / 1e-110 unknown protein
PFAM info
Representative CDS sequence
>Lus10024592 pacid=23161615 polypeptide=Lus10024592 locus=Lus10024592.g ID=Lus10024592.BGIv1.0 annot-version=v1.0
ATGGCGGCTCTACTCGGCATGTCTACAACCTTCGCATTCCGCGGCGTCAGGAATCGCCCGATGATCCAAACGAAGAGGATCGGCCACCCGCCGAGAATCT
GCTGCGTTAATTGGGATCCGGAAGGAATTCTGGGGACGCCGAAGACAGGACACCTTGCTCGGCTGGAGTTCAAGCGTCGGATGGAGAAGGACTCCGATGC
TCGCGAGGCGTTCGAGAAGCACCTCCGCGAGGAGAAAGAGCGTCGCCGAACTCTTCGGGAATCCCGGGTGATACCGGAGACTCCGGCGGGGCTGATTGAG
TACTTCCTCGATACTGAAGCTCAGGAGATTGAGTACGAGATCGCCAGGCTAAGGCCGCGGCTGAGCGAGGCGTTTTTCGGACTGCTCCAGCTTGAAGTTG
GCCAGATTCGTTTTGCTGTTACAAAGACGGAGGAAATGGAAGACAGGGTGTTTGAATTGGAAACGTTACAGAAGGCACTGAAAGAAGGGATAGAAGCATA
TGATCGTATGCAAGTTGAGCTTGTAACAGCGAGGAAAAGTTTGACGGAGATATTGACATCCAAGGACATCAAAGCAACTCTGTTAGAAATGGTTGAGCGG
AATGAACTTAATAGGTCTTTGTTGACACTTCTCGATGAAAACATTGGAAATGCTCAAAAGGGCAATCAGAAAGAAGCAGCTGTTTTCATGGAAAAAATCC
GCGGAGCTATTCTCAAGTATATTACAGTATGA
AA sequence
>Lus10024592 pacid=23161615 polypeptide=Lus10024592 locus=Lus10024592.g ID=Lus10024592.BGIv1.0 annot-version=v1.0
MAALLGMSTTFAFRGVRNRPMIQTKRIGHPPRICCVNWDPEGILGTPKTGHLARLEFKRRMEKDSDAREAFEKHLREEKERRRTLRESRVIPETPAGLIE
YFLDTEAQEIEYEIARLRPRLSEAFFGLLQLEVGQIRFAVTKTEEMEDRVFELETLQKALKEGIEAYDRMQVELVTARKSLTEILTSKDIKATLLEMVER
NELNRSLLTLLDENIGNAQKGNQKEAAVFMEKIRGAILKYITV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G62780 unknown protein Lus10024592
[exp]
0 1
AT1G02150 Tetratricopeptide repeat (TPR)... Lus10009787
[exp]
3.7 0.9518
AT1G62780 unknown protein Lus10032229
[exp]
4.9 0.9436
AT5G58140 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LI... Lus10001355
[exp]
5.2 0.9359
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Lus10005553
[exp]
5.8 0.9532
AT5G55220 trigger factor type chaperone ... Lus10010250
[exp]
6.2 0.9452
AT2G04360 unknown protein Lus10016084
[exp]
7.2 0.9231
AT5G55580 Mitochondrial transcription te... Lus10003775
[exp]
8.5 0.9379
AT2G33800 EMB3113 EMBRYO DEFECTIVE 3113, Ribosom... Lus10025445
[exp]
8.5 0.9430
AT3G12110 ACT11 actin-11 (.1) Lus10001694
[exp]
9.4 0.9343
AT1G35680 RPL21C chloroplast ribosomal protein ... Lus10014819
[exp]
10.7 0.9434

Lus10024592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.