Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62770 131 / 2e-38 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 127 / 1e-36 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 123 / 4e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G12390 121 / 2e-34 PME1 pectin methylesterase inhibitor 1 (.1) AT4G25260 114 / 8e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 103 / 1e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 101 / 2e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G70720 97 / 4e-25 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 97 / 4e-25 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G20740 95 / 3e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032230 [exp] 278 / 6e-96 AT1G62770 166 / 9e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 140 / 9e-42 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 138 / 4e-41 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 118 / 3e-33 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 113 / 2e-31 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 110 / 4e-30 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031132 [exp] 102 / 3e-27 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 96 / 2e-24 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038645 [exp] 92 / 8e-23 AT2G01610 212 / 2e-69 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G127500 [exp] 133 / 3e-39 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 133 / 5e-39 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 132 / 6e-39 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.008G132600 [exp] 109 / 1e-29 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119200 [exp] 103 / 5e-29 AT1G62770 117 / 2e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G109300 [exp] 103 / 3e-27 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 101 / 9e-27 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G145800 [exp] 101 / 1e-26 AT4G00080 164 / 4e-51 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 100 / 3e-26 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128400 [exp] 100 / 4e-26 AT5G62360 134 / 2e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10024593 pacid=23161578 polypeptide=Lus10024593 locus=Lus10024593.g ID=Lus10024593.BGIv1.0 annot-version=v1.0 ATGGCAAACCATCTTCTTCGTCCTCTTCTACTTCTGGTTCCATCCCTCCTGATAACCACCACAACCTCAGCCATCAACCCAAAACAACAACCATCACCCT TCATATCATCATCATGCAAGCTTACCCTCTACCCAGACCTCTGCATCCAATCACTCTCCCCTTTCTCAACCTCCATCCGCCAGAACGACCACCGCCACCT CGCCCTCACTGCCCTCTCCTTCAGCCTCTCCCGCGCCAGGTCCGCCTCCTCCTACATCTCCGCCGTCCTCCGCCCCGGCCGCCCCAGTCCGGCAGCACTA AACCAGGCGGTCAACGACTGCATCCGCAACATGGCCGACGGGGTCGCCCGGCTGACCCAGTCGGTCAGCGAGCTCGGTCAGATGGGCTCGGGCGGGCCAG AGGATCGGTTCCAGTGGCACATGAGTAACTTGCAGACGTGGGTGAGTACTGCGCTGACCTGCGAGAACAGCTGCCTTGACGGGTTTAATTCGTTGGATGG TCCGGTTAAGAATGCGGTTCGAAACCGGGTTGTTTACGTGGCTAAGGTTACGAGTAATGCTCTTGCCTTGATTCATGGGTTTGCTTCTAAGCATGACCGT CCTGGGAGGCTTCCTTGA
AA sequence Show only first row Show all	>Lus10024593 pacid=23161578 polypeptide=Lus10024593 locus=Lus10024593.g ID=Lus10024593.BGIv1.0 annot-version=v1.0 MANHLLRPLLLLVPSLLITTTTSAINPKQQPSPFISSSCKLTLYPDLCIQSLSPFSTSIRQNDHRHLALTALSFSLSRARSASSYISAVLRPGRPSPAAL NQAVNDCIRNMADGVARLTQSVSELGQMGSGGPEDRFQWHMSNLQTWVSTALTCENSCLDGFNSLDGPVKNAVRNRVVYVAKVTSNALALIHGFASKHDR PGRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62770			Plant invertase/pectin methyle...		Lus10024593 [exp]	0	1
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	4.2	0.9446
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	5.9	0.9283
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	7.1	0.9315
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	10.1	0.9415
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	12.0	0.9217
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	18.3	0.9285
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	21.2	0.9282
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	23.2	0.9163
AT2G28690			Protein of unknown function (D...		Lus10005884 [exp]	24.5	0.8797
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Lus10009745 [exp]	27.5	0.9165

Compare expression of checked genes

Lus10024593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.