Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48620 86 / 1e-17 HON5 high mobility group A5 (.1) AT3G18035 86 / 1e-17 HON4 winged-helix DNA-binding transcription factor family protein (.1) AT2G30620 61 / 1e-10 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G06760 46 / 2e-05 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032231 [exp] 555 / 0 AT1G48620 103 / 2e-23 high mobility group A5 (.1) Lus10004328 [exp] 197 / 1e-56 AT3G18035 129 / 2e-32 winged-helix DNA-binding transcription factor family protein (.1) Lus10028911 [exp] 187 / 7e-53 AT1G48620 128 / 4e-32 high mobility group A5 (.1) Lus10004056 [exp] 62 / 6e-11 AT1G14900 104 / 5e-28 high mobility group A (.1) Lus10022001 [exp] 61 / 9e-10 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005534 [exp] 57 / 9e-09 AT2G30620 116 / 9e-32 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10042541 [exp] 57 / 1e-08 AT2G30620 121 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005535 [exp] 56 / 2e-08 AT2G30620 124 / 8e-35 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006561 [exp] 49 / 3e-06 AT2G30620 115 / 1e-31 winged-helix DNA-binding transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040200 [exp] 102 / 5e-23 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.012G048500 [exp] 96 / 8e-21 AT1G14900 66 / 5e-12 high mobility group A (.1) Potri.008G132400 [exp] 74 / 7e-15 AT1G14900 107 / 4e-29 high mobility group A (.1) Potri.010G109600 [exp] 74 / 7e-15 AT1G14900 98 / 3e-25 high mobility group A (.1) Potri.017G129400 [exp] 70 / 1e-13 AT1G14900 102 / 2e-27 high mobility group A (.1) Potri.004G087500 [exp] 67 / 1e-12 AT1G14900 91 / 1e-22 high mobility group A (.1) Potri.002G199900 [exp] 50 / 8e-07 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.008G162300 [exp] 49 / 1e-06 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G069700 [exp] 50 / 3e-06 AT5G08780 83 / 3e-16 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G116600 [exp] 47 / 6e-06 AT2G18050 117 / 3e-33 histone H1-3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10024594 pacid=23161530 polypeptide=Lus10024594 locus=Lus10024594.g ID=Lus10024594.BGIv1.0 annot-version=v1.0 ATGGATCCGCATCATCCCCTTCACAACTCCATCCCAGCGTGGGCCCAGAACGCTCTTCCTCCTCCTCCGCCTTCCTCCGCCGCCGCCGCCGCCGCTGTCC CGTTCTCTGTCTCCTATCCTGACAACAACTATGCACCAAATCTACACCCACTCAACTACCATCCAGCTCCACCTCCAGTTCAAACCGCTCCTTCTCCATT TCCTGTCCCTGCTCCTAATCCATCTCCAGCCAAACCTTGGAACCCCGCCGCTGCTCCTCCGCCGTCGGGTGGATACCAACCCGGCCTCATGGCTTCCTAC GCTGAGATGATTCACTCTGCAATTACGGCGCTGAATGAGCGGGAGGGCTCGAGCAAGAGAGCGATATCGAAGTACATCGAGAAAGCTTACCCTGGCCTCC CGGAGACTCACTCGGTTCTGTTGACTGAGAACTTGAAGCGGCTTAAATCCAATGGATTGCTCGTCATGATGAAGAAATCTTACATGCTCCCCGGATCTGG CTTCCCCGCCAACATCAACGACCTTCCTGATGCTTCCGCCGCCGCTCCGTCGGATCCGGTGACTTCACCGCCGTCTGAAGTTGCTGCTCCTGCTACTGCT ACTTCCCCTCTAGTGTCTCAGTCTGTTGGGTCTAAAAGAGGCCGTGGCAGGCCTCCGAAGCCCAAGCCCATCGTAGATGGGCTGGGGCTACCCAATGGAC AGCCTGAATCCGGTCCAGGACCGTTGCCTTCACTCGAACCGGCTGTTCTTCAGCCTATGAATGATGCTATGCCACCGGGGTTTGTCCCCAACGGTCAGCC GACACAGCAGCAGCATTTCACCGGCGATATCAACATGGAGGAAACTGCTCATCCTCCGAATCAGTATAGTGAGCCGGTAAATGTCCCGATTGCATTGGTG GAAAATGCTAGCGAGGTTAAGAGGAGGCCGGGGCGTCCTACGAAGAAGCTTTTGGCTGTTGATGCAGCTGGAGTTGTGATAGGGAAAAGGGGGAGAGGGA GGCCGCCCAAGAATGGATTGGGATTAGGTCCGAAGAAGAAGAGTCCCGGGAGGCCTAGGAAGCCAAAGCCTAAGACGGTGGCTGATGTGTCTTCGGGGAC CAATGGGTATAAGAAGCGCCCTGGGCGTCCTCCTAAGAATAATTCGGTTTTAGTTCCTTATGCTCCGTCGGGGGAGGTGAATGTGAGTGTGCCTAGGCCT AGGGGGCGTCCGAGAAAGGGTACTGGGTCTATTGCTGCTGGAGTTGGTGTGGGAGGGTTTTCGGAGAAGCGGTCTGATGATGATGTTGTCCAGAAGCAGC CTAGGAGGAGTGGGAGGCCAGTTGGTCGTCCAAGGAAGTATCTTGAAGATGCAGGAACTGAAACAGAGACACAAGGAGGCTTCCGAACGAAGCTCTCATC TTTCCAATCGCGAATTAGAGAAGTGTACGACGTGCTGAACCCAATGTTGAACGAGGAAGCTCCAGACCATGTGAAAAGCGCTGTCGAACAACTGAAAAAA CTTGGAGCCCTTGACATCGACAGGGACCTCGACGAGCAATTTCTGAACCCAGATTTTGAGCAGGAGGTTCATATGGAGGAACCTGGTCCTGTCGAGAATT AG
AA sequence Show only first row Show all	>Lus10024594 pacid=23161530 polypeptide=Lus10024594 locus=Lus10024594.g ID=Lus10024594.BGIv1.0 annot-version=v1.0 MDPHHPLHNSIPAWAQNALPPPPPSSAAAAAAVPFSVSYPDNNYAPNLHPLNYHPAPPPVQTAPSPFPVPAPNPSPAKPWNPAAAPPPSGGYQPGLMASY AEMIHSAITALNEREGSSKRAISKYIEKAYPGLPETHSVLLTENLKRLKSNGLLVMMKKSYMLPGSGFPANINDLPDASAAAPSDPVTSPPSEVAAPATA TSPLVSQSVGSKRGRGRPPKPKPIVDGLGLPNGQPESGPGPLPSLEPAVLQPMNDAMPPGFVPNGQPTQQQHFTGDINMEETAHPPNQYSEPVNVPIALV ENASEVKRRPGRPTKKLLAVDAAGVVIGKRGRGRPPKNGLGLGPKKKSPGRPRKPKPKTVADVSSGTNGYKKRPGRPPKNNSVLVPYAPSGEVNVSVPRP RGRPRKGTGSIAAGVGVGGFSEKRSDDDVVQKQPRRSGRPVGRPRKYLEDAGTETETQGGFRTKLSSFQSRIREVYDVLNPMLNEEAPDHVKSAVEQLKK LGALDIDRDLDEQFLNPDFEQEVHMEEPGPVEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	0	1
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	1.7	0.8700
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	3.9	0.8521
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	4.0	0.8135
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	6.0	0.8301
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	9.2	0.8277
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	10.7	0.8247
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	10.7	0.8551
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	10.8	0.7664
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	11.8	0.7764
AT2G16676			unknown protein		Lus10035139 [exp]	13.0	0.7898

Compare expression of checked genes

Lus10024594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.