Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62760 118 / 3e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 91 / 1e-22 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 82 / 2e-19 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 81 / 1e-18 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 78 / 2e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 77 / 3e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 76 / 5e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 76 / 9e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G51520 75 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 72 / 3e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032232 [exp] 313 / 2e-109 AT1G62760 141 / 9e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10028910 [exp] 170 / 3e-53 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10004327 [exp] 169 / 9e-53 AT1G62760 164 / 8e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 94 / 1e-23 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 94 / 1e-23 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031717 [exp] 93 / 3e-23 AT5G62360 179 / 3e-57 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 92 / 6e-23 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 90 / 5e-22 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 88 / 2e-21 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113600 [exp] 115 / 5e-32 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G119300 [exp] 113 / 4e-31 AT1G62760 167 / 3e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 107 / 1e-28 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 102 / 4e-27 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 94 / 6e-24 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 87 / 4e-21 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 87 / 4e-21 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 81 / 6e-19 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.015G128500 [exp] 81 / 1e-18 AT4G25250 144 / 2e-43 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127400 [exp] 78 / 1e-17 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10024595 pacid=23161633 polypeptide=Lus10024595 locus=Lus10024595.g ID=Lus10024595.BGIv1.0 annot-version=v1.0 ATGAACACAACTTCAGCAGTAGCAGCAATCTTCACACTAATCATCATCTCCGCCAAACTCCTCCATTCAGCCGCTGCCGCCGACGAACCAACCACCACTG CGGACTTCATCAAAACCTCCTGCAACTCAACCCTCTACCGCAAGCTCTGCTTCCGAACACTCTCCCCGTACGCCTCCGAAATCGGATCCGACCCGAAACT CCTCGCACTCAAGTCCCTCAACATAACCCTCGAAGTCACCCAATCCGCATCCAAGCTCATGAAGCGAATCGCCCGGATCCCCGGCGTCACCGGAGCGGCG GCGGACTGTGTCGAGGAGGTCGAGAATGCGGTGGATGCTCTGGCGAAGTCGATTGGAGAACTCGGCGGGGCTCCGAAAGGAGGTGGACCCGGGTTCTGTC GGGTCATCGACGACGTGGAGACTTTTGTAAGCGCGGCGGAGACGTTCGACGAGACGTGTATTGATGGGTTTGAGGAGGCGCCGGGGAAGGTGGTTGGTGG GTCTTTGTCGGCGGCTAAGGTTAACCGGAATGCGAAGAAGATTGTAGAGAAGAGAGTGAAGAAGGTTGAGAAGTATACGAGTAACTGTTTGGCTTTGGTT GATCTTTATGCTTCTGTGGAATTTCGCCATGTTAAGTGTTGA
AA sequence Show only first row Show all	>Lus10024595 pacid=23161633 polypeptide=Lus10024595 locus=Lus10024595.g ID=Lus10024595.BGIv1.0 annot-version=v1.0 MNTTSAVAAIFTLIIISAKLLHSAAAADEPTTTADFIKTSCNSTLYRKLCFRTLSPYASEIGSDPKLLALKSLNITLEVTQSASKLMKRIARIPGVTGAA ADCVEEVENAVDALAKSIGELGGAPKGGGPGFCRVIDDVETFVSAAETFDETCIDGFEEAPGKVVGGSLSAAKVNRNAKKIVEKRVKKVEKYTSNCLALV DLYASVEFRHVKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62760			Plant invertase/pectin methyle...		Lus10024595 [exp]	0	1
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	3.5	0.8472
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	7.5	0.8263
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10021728 [exp]	23.6	0.8294
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10041759 [exp]	36.9	0.8082
AT3G13062			Polyketide cyclase/dehydrase a...		Lus10034791 [exp]	46.1	0.8135
AT1G51720			Amino acid dehydrogenase famil...		Lus10006872 [exp]	60.7	0.7943
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10018039 [exp]	69.8	0.7505
					Lus10037345 [exp]	91.7	0.7407
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	94.3	0.7845
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	103.5	0.7769

Compare expression of checked genes

Lus10024595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.