Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62740 842 / 0 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G12400 836 / 0 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 830 / 0 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G04190 93 / 2e-20 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 82 / 2e-16 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04710 80 / 1e-15 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G42810 76 / 2e-14 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT4G22670 68 / 5e-12 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G17970 69 / 6e-12 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT1G53300 66 / 6e-11 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032234 [exp] 1016 / 0 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10028919 [exp] 941 / 0 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 919 / 0 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 91 / 1e-19 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021905 [exp] 82 / 1e-16 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018179 [exp] 82 / 2e-16 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 82 / 2e-16 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042001 [exp] 81 / 8e-16 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 81 / 1e-15 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119500 [exp] 864 / 0 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.003G113400 [exp] 860 / 0 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.008G156500 [exp] 94 / 1e-20 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 93 / 2e-20 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G177400 [exp] 91 / 3e-19 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G054800 [exp] 81 / 5e-16 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.013G042300 [exp] 79 / 3e-15 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.012G046900 [exp] 79 / 5e-15 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 78 / 8e-15 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.018G100700 [exp] 73 / 6e-14 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10024597 pacid=23161504 polypeptide=Lus10024597 locus=Lus10024597.g ID=Lus10024597.BGIv1.0 annot-version=v1.0 ATGGCTGACGAAGCCAAAGCCAAGGGCAACGCCGCCTTCTCCGCCGGAGACTACTCCACCGCCGTCAAGCACTTCACGGAAGCCATCTCTCTCTCGCCTT CCAACCACGTCCTCTACTCCAACCGATCCGCCGCCCACGCCTCCCTCCAGAACTACTCCGACGCCCTTGTCGACGCCGAGAAGACCGTTGAGCTGAAGCC GGACTGGGCCAAAGGATACTCCAGGCTCGGCGCTGCTCATAGCGGATTGAACCAGCATCAGGACTCCATCGCCGCGTACAAAAAGGGGTTGGAGCTCGAC CCGAGCAACGAAGCTTTGAAATCCGGATTGGCAGATGCTGAATCCAGAGCTTCTTCTTCTTCTAGGTCTAGAGCTGCTCCTCCTCCGCAGGGGCCGAATC CGTTCTCCGATGCGTTTTCGGGGCCGGAGATGTGGGCGAAGCTGACGGCGGATCCATCCACTAGGGTTTACCTGCAGCAGCCGGATTTCGTCAGGATGAT GAAGGAGATTCAGAAGAATCCTAGCAATTTGAATCTGTACTTGAAGGATCAGAGAGTTATGCAGGCTTTGGGGGTTTTGTTGAACGTGAAGCTCAGGGGT GCTGATGCCACCGACATGGATATTCCGGAGGCAGAGACAGAGGTTGAGGTGGAGGCTGCTCCTTCTTCTGCTCCGGTGGAGGAGAAGAGGAGTCGGGAGC CTGAGCCGGAACCTATGGAGGAGGTGCCCGATGAGAAGGAGGGTAAAGCTCAGGCCTTGAAGGAGAAAGAGCTGGGGAATGCTGCTTACAAGAAGAAGGA TTTCGAAACTGCGATTTCACATTATACAAAGGCGATTGAGCTCTATGATGAGGACATTTCGTTTTTGACGAATCGCGCTGCTGTGTACTTGGAGATGGGC AAGTATGAAGAGTGTATCAAGGACTGTGACAAGGCAGTGGAGCGTGGAAGGGAGCTGAGATCAGATTTCAAGATGGTAGCAAGAGCTTTGACAAGGAAAG GATCCGCCTTGGTGAAAATGGCTAAAACTTCTAAGGATTACGAGCCAGCCATCGAGACATTCCAAAAGGCACTGACCGAACACCGCAACCCCGATACATT GAAGAAGCTAAATGAAGCAGAGAAGGCCAAGAAGGACCTCGAACAGCAGGAGTACTTCGATCCTAAGTTGGCTGATGAAGCACGCGAGAAAGGAAACGAA TGCTTCAAGGAGCAGAAATATCCCGATGCAGTGAGGCATTACACAGAAGCAATCAAAAGGAACCCCAAGGATCACAAGGCATACAGCAACAGAGCTGCTT GCTACACGAAACTCACGGCTATGCCCGAGGGGTTGAAGGATGCAGAGAAGTGCATCGAGCTCGACCCCACTTTTGCCAAAGGGTACACGAGGAAGGGCGC TGTTCAGTTCTTCATGAAAGAGTATGAGAAGGCATTGGAGACCTACCAAGCTGGATTGAAACACGACCCTCGAAACCAAGAGCTGCTTGATGGCGTGAGA AGATGTGTCGAGCAAATGAATAAGGCTAGCCGCGGGGATCTAACCCCTGAAGAACTGAAAGAGAGACAGGCAAAGGGAATGCAGGACCCAGAAGTCCAGA ACATCCTCTCCGACCCAGTCATGAGACAAGTGCTAACGGATATCCAGGAGAACCCTAGTGCAGCTCAGGAGCATATGAAGAACCCGATGGTGATGAACAA GATCCAGAAGCTGGTGAATGCCGGCATCATCCAAGTTCGGTAG
AA sequence Show only first row Show all	>Lus10024597 pacid=23161504 polypeptide=Lus10024597 locus=Lus10024597.g ID=Lus10024597.BGIv1.0 annot-version=v1.0 MADEAKAKGNAAFSAGDYSTAVKHFTEAISLSPSNHVLYSNRSAAHASLQNYSDALVDAEKTVELKPDWAKGYSRLGAAHSGLNQHQDSIAAYKKGLELD PSNEALKSGLADAESRASSSSRSRAAPPPQGPNPFSDAFSGPEMWAKLTADPSTRVYLQQPDFVRMMKEIQKNPSNLNLYLKDQRVMQALGVLLNVKLRG ADATDMDIPEAETEVEVEAAPSSAPVEEKRSREPEPEPMEEVPDEKEGKAQALKEKELGNAAYKKKDFETAISHYTKAIELYDEDISFLTNRAAVYLEMG KYEECIKDCDKAVERGRELRSDFKMVARALTRKGSALVKMAKTSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQQEYFDPKLADEAREKGNE CFKEQKYPDAVRHYTEAIKRNPKDHKAYSNRAACYTKLTAMPEGLKDAEKCIELDPTFAKGYTRKGAVQFFMKEYEKALETYQAGLKHDPRNQELLDGVR RCVEQMNKASRGDLTPEELKERQAKGMQDPEVQNILSDPVMRQVLTDIQENPSAAQEHMKNPMVMNKIQKLVNAGIIQVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10024597 [exp]	0	1
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	1.0	0.8046
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	7.1	0.7538
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10028437 [exp]	8.8	0.7200
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025276 [exp]	12.5	0.7647
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10008670 [exp]	14.8	0.7652
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10010206 [exp]	14.8	0.7318
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10017407 [exp]	17.7	0.7531
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	36.1	0.7363
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	36.3	0.7393
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	36.7	0.7280

Compare expression of checked genes

Lus10024597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.