Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62600 580 / 0 Flavin-binding monooxygenase family protein (.1) AT1G62620 562 / 0 Flavin-binding monooxygenase family protein (.1) AT1G63370 562 / 0 Flavin-binding monooxygenase family protein (.1) AT1G12200 550 / 0 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G12140 543 / 0 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) AT1G62560 525 / 0 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G62540 515 / 0 FMOGS-OX2 ,FMO GS-OX2 flavin-monooxygenase glucosinolate S-oxygenase 2 (.1) AT1G62580 511 / 2e-179 NOGC1 nitric oxide-dependent guanylate cyclase 1, Flavin-binding monooxygenase family protein (.1) AT1G62570 506 / 8e-178 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1) AT1G12130 506 / 8e-178 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024609 [exp] 671 / 0 AT1G62560 444 / 1e-154 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) Lus10032247 [exp] 458 / 2e-161 AT1G12140 315 / 1e-105 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) Lus10015731 [exp] 384 / 2e-129 AT5G07800 621 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10003474 [exp] 373 / 5e-125 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10032235 [exp] 193 / 1e-60 AT1G62600 117 / 2e-32 Flavin-binding monooxygenase family protein (.1) Lus10038126 [exp] 77 / 6e-15 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10005178 [exp] 77 / 1e-14 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 70 / 2e-12 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 63 / 2e-10 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121100 [exp] 628 / 0 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121000 [exp] 561 / 0 AT1G12200 557 / 0.0 flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) Potri.013G019900 [exp] 553 / 0 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.012G067500 [exp] 413 / 2e-141 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.006G137600 [exp] 69 / 2e-12 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 69 / 2e-12 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 68 / 4e-12 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 68 / 5e-12 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 67 / 7e-12 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.002G254200 [exp] 62 / 4e-10 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10024598 pacid=23161634 polypeptide=Lus10024598 locus=Lus10024598.g ID=Lus10024598.BGIv1.0 annot-version=v1.0 ATGGTAACGGCAACGGCGGTGAACTCCCTGTCAATGACCTCCCGCCGCGTTGCTGTCATCGGAGCCGGCGCAGCGGGCCTCGTCGCCGCCAACGAGCTCC GCCGCGAAGGACACAAAGTCGTCGTCTTTGAGAAAAGCAACCAAGTCGGCGGAATCTGGGTCTACACTCCTGAATCGGAGGCCGACCCGATGAGCCTCGA CCCGGCGAGGAAAATCGTCCACACCAGCCTGTACACTTCTCTTCGCACCAACCTCCCGCGGGAAGTGATGGGGTACCGAGAGTACCCGTTCACTACCCGA CCCGACGACGAGGGGTCCCGCGATGGCAGACGGTTCCCGGGTCATCGGGAAGTGATGCTGTACTTGCAGGACTACGCTAGGGAGTTTAGGATCGAGGAGA TGGTGAAGTTTGAAAGAGAAGTGGTCAAGGTTAGGTTCACGGCGACGAATAATTGGGAAGTTCGGTCAAGGAATTCTAATAACAGTGACGAAGAAGGATT CGATGACGAGAGCTACGATGCCGTCGTTGTTTGTAACGGCCATTACACGGAGGTTCGCCCAGCTGAGATTCCTGGGATAAAGTCATGGCGAGGGAAGCAA ATGCACAGCCACAATTATCGAACACCGGAGCCGTTTCGAAATCGAGTGGTAGTTGTGATAGGGAGTCAAGCGAGTGCTGCAGATATATCGAGGGAAATCG CTGGGGTTGCGAAAGAGGTCCATCTCGCATCCAGATCAGTTGCTGATGAAACTTACGAAACGATGCCTGCGTATGACAACATGTATATCCATTCTATGAT AGAGAGTGCTCATGAAGATGGATCGTTGACATTTCGAAACGGGAGAGTCGTAGCTGCGGATATCATTCTACATTGTACCGGGTACAAGTATCACTTCCCG TTTCTTGATACTCAAGGCATCGTGACCGTGGATGACAACCGTGTTGGACCGTTATACAAACATGTGTTCCCTCCAGCTTTGGCTCCAGGGCTCTCATTTG TCGGGTTACCATGGAAGGTTGTCCCTTTCCCGTTATTCGAACTCCAAAGCAGGTGGATCGCCGGAGCTTTATCAGGCCGCATCACGCTGCCTTCCGAGGA AGAAATGATGGAAGATGTCAAAGCATTCTATTCAACACTCGAAGCTTCGAACATCCCTAAACGATACACTCATAACTTGGATCTTGACCAGTTTGAATAC AATAACTGGATTGCTGCTCAATGTGGGTGCCCTGGCTTCGAGGAATGGAGAAAGGGAATGTACCTCTCGTCAAGAGAAGACAAACGGCGCACGCCAGAGG GCTATCGCGACGAATGGAATGATCACGAGTTGATAGCAGAAGCCAACAGGGACTTTGCAAAATACTCGGTGAAGTGA
AA sequence Show only first row Show all	>Lus10024598 pacid=23161634 polypeptide=Lus10024598 locus=Lus10024598.g ID=Lus10024598.BGIv1.0 annot-version=v1.0 MVTATAVNSLSMTSRRVAVIGAGAAGLVAANELRREGHKVVVFEKSNQVGGIWVYTPESEADPMSLDPARKIVHTSLYTSLRTNLPREVMGYREYPFTTR PDDEGSRDGRRFPGHREVMLYLQDYAREFRIEEMVKFEREVVKVRFTATNNWEVRSRNSNNSDEEGFDDESYDAVVVCNGHYTEVRPAEIPGIKSWRGKQ MHSHNYRTPEPFRNRVVVVIGSQASAADISREIAGVAKEVHLASRSVADETYETMPAYDNMYIHSMIESAHEDGSLTFRNGRVVAADIILHCTGYKYHFP FLDTQGIVTVDDNRVGPLYKHVFPPALAPGLSFVGLPWKVVPFPLFELQSRWIAGALSGRITLPSEEEMMEDVKAFYSTLEASNIPKRYTHNLDLDQFEY NNWIAAQCGCPGFEEWRKGMYLSSREDKRRTPEGYRDEWNDHELIAEANRDFAKYSVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62620			Flavin-binding monooxygenase f...		Lus10024598 [exp]	0	1
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	2.8	0.8471
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	6.6	0.8386
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	7.1	0.7819
AT2G42780			unknown protein		Lus10010947 [exp]	7.4	0.7976
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	7.7	0.8051
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	11.5	0.7865
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10022083 [exp]	13.4	0.7650
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10033449 [exp]	14.1	0.7524
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10029276 [exp]	14.6	0.6734
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	18.7	0.7822

Compare expression of checked genes

Lus10024598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.