Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62710 709 / 0 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT4G32940 575 / 0 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT2G25940 558 / 0 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT3G20210 408 / 7e-139 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G08750 93 / 2e-20 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032236 [exp] 969 / 0 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10007450 [exp] 577 / 0 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024446 [exp] 545 / 0 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10033344 [exp] 460 / 4e-159 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1) Lus10034798 [exp] 239 / 3e-75 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10034797 [exp] 102 / 3e-26 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 93 / 2e-20 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 92 / 5e-20 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10006571 [exp] 53 / 2e-07 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G119800 [exp] 732 / 0 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1) Potri.003G113300 [exp] 719 / 0 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.018G059400 [exp] 580 / 0 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.006G232900 [exp] 574 / 0 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.008G003400 [exp] 487 / 7e-169 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.019G014000 [exp] 93 / 2e-20 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF01650 [flax] [poplar] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Lus10024599 pacid=23161537 polypeptide=Lus10024599 locus=Lus10024599.g ID=Lus10024599.BGIv1.0 annot-version=v1.0 ATGGCGATGATCAAGCTTCCTCTGGTTTTCCTCATCGCTCTCTCTGCTTCTCTGGCCGCCGGTGAAGCTCACCGGATGAAACACACCTTCCAGCCTGGAA TCGTCATGCCTACCGAGCACGGAAGAACGGTCGATGAATCGGCCGAAGACGACGAAATCGGCACAAGGTGGGCCGTTCTCGTCGCCGGCTCCAAAGGATA CGGAAACTACAGGCATCAGGCGGATGTTTGCCATGCTTATCAAATCCTTCGAAAAGGCGGGTTGAAGGAGGAGAACATCGTGGTGTTCATGTACGACGAT ATCGCAAGTAGCGAGCTTAATCCGAGGCCAGGAATCATCATCAACCATCCTCAGGGCGAGGACGTCTATGCCAGCGTCCCGAAGGACTATACGGGGGAGG CTGTGACCGCTGAGAATCTGTATGCGGTGATTATGGGTGACAAGAGTGCTGTTAAAGGGGGGAGCGGAAAGGTTATAGCTAGCAAGCCGAACGACCACAT TTTCGTGTACTATTCCGATCATGGCGGTCCTGGAGTCCTCGGGATGCCGAACCTTCCTTTCTTGTACGCGATGGATTTCATCGAGGTCTTGAAGAGGAAG CACGCAGCCGGAACTTACAAAGAAATGGTATTATATATCGAGGCTTGCGAAAGCGGGAGCATTTTTGAAGGAATCATGCCAGGGGACTTGAACATCTATG TGACGACAGCTTCGAACGCGCAGGAGAGCAGTTTCGGAACTTACTGCCCTGGAATGGACCCTCCTCCGCCTCCGGAGTTCATCACTTGCCTCGGAGATTT GTACAGTGTTGCATGGATGGAAGACAGCGAAACGCACAATCTGAAGAGGGAGACGGTGGACCAGCAGTACAAAGCGGTAAAGACGAGGACATCGAATGTG AACGCTTACGCAGGCGGTTCACACGTGATGGAGTATGGAAACGGAAGCATCAAAGCCGAGAAGCTCTACTTGTACCAAGGGTTCGATCCGGCCACCGTGA ACTTCCCTCCACACGACAACAATGCCATCGGGACGAGGATGGAAGTTGTTAACCAGAGAGATGCAGAGATTCTCTTCTTGTGGCATATGTACAAGCGAGC GGAGAAGGATTCAGCAAAGAAGGCAGCGATACTCGAGGAGATCAGGCGGACAATGACCCACCGGAAACACTTAGACGGCAGCATTGAGTTGGTAGGGACA TTACTCTTCGGTTCTTTGAACAGCCCCGGAGTGCTGAACAAGGTGAGGGAGGAAGGGTCCCCACTCGTAGACGACTGGGGATGCTTGAAATCGATGGTGA GGGCGTTCGAGGCACGGTGTGGGTCGCTGACGCAGTACGGGATGAAGCACATGAGATCGTTTGCGAACGTGTGCAACAGCGGAGTTACGGTGGCCGAGAT GGAGGAAGCTGCCGGAGTGGCGTGTGCAGGGTATGATGCTGGTGGTGTTGCCAATTGGCACCCTCAAAATGTGGGGTTTAGTGCTTAA
AA sequence Show only first row Show all	>Lus10024599 pacid=23161537 polypeptide=Lus10024599 locus=Lus10024599.g ID=Lus10024599.BGIv1.0 annot-version=v1.0 MAMIKLPLVFLIALSASLAAGEAHRMKHTFQPGIVMPTEHGRTVDESAEDDEIGTRWAVLVAGSKGYGNYRHQADVCHAYQILRKGGLKEENIVVFMYDD IASSELNPRPGIIINHPQGEDVYASVPKDYTGEAVTAENLYAVIMGDKSAVKGGSGKVIASKPNDHIFVYYSDHGGPGVLGMPNLPFLYAMDFIEVLKRK HAAGTYKEMVLYIEACESGSIFEGIMPGDLNIYVTTASNAQESSFGTYCPGMDPPPPPEFITCLGDLYSVAWMEDSETHNLKRETVDQQYKAVKTRTSNV NAYAGGSHVMEYGNGSIKAEKLYLYQGFDPATVNFPPHDNNAIGTRMEVVNQRDAEILFLWHMYKRAEKDSAKKAAILEEIRRTMTHRKHLDGSIELVGT LLFGSLNSPGVLNKVREEGSPLVDDWGCLKSMVRAFEARCGSLTQYGMKHMRSFANVCNSGVTVAEMEEAAGVACAGYDAGGVANWHPQNVGFSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10024599 [exp]	0	1
					Lus10004651 [exp]	4.7	0.9674
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	4.7	0.9676
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	7.7	0.9666
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	10.4	0.9628
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	10.6	0.9569
AT1G58070			unknown protein		Lus10015482 [exp]	13.8	0.9610
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	15.3	0.9595
AT5G58375			Methyltransferase-related prot...		Lus10008585 [exp]	16.4	0.9244
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	16.7	0.9507
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	17.2	0.9528

Compare expression of checked genes

Lus10024599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.