Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12410 131 / 3e-39 SAUR-like auxin-responsive protein family (.1) AT4G22620 127 / 2e-37 SAUR-like auxin-responsive protein family (.1) AT3G60690 99 / 2e-26 SAUR-like auxin-responsive protein family (.1) AT2G45210 97 / 5e-26 SAUR-like auxin-responsive protein family (.1) AT2G46690 78 / 6e-19 SAUR-like auxin-responsive protein family (.1) AT3G61900 70 / 1e-15 SAUR-like auxin-responsive protein family (.1) AT4G00880 69 / 1e-15 SAUR-like auxin-responsive protein family (.1) AT5G18060 68 / 2e-15 SAUR-like auxin-responsive protein family (.1) AT5G53590 69 / 5e-15 SAUR-like auxin-responsive protein family (.1) AT3G03820 67 / 5e-15 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032237 [exp] 237 / 7e-81 AT4G12410 149 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10004337 [exp] 127 / 1e-37 AT4G12410 110 / 2e-31 SAUR-like auxin-responsive protein family (.1) Lus10028920 [exp] 113 / 8e-33 AT4G12410 106 / 1e-30 SAUR-like auxin-responsive protein family (.1) Lus10015879 [exp] 91 / 3e-23 AT3G60690 151 / 7e-47 SAUR-like auxin-responsive protein family (.1) Lus10009286 [exp] 91 / 3e-23 AT3G60690 150 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10030295 [exp] 89 / 1e-22 AT2G45210 131 / 1e-39 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 72 / 1e-16 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 66 / 1e-14 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 66 / 3e-14 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113100 [exp] 119 / 3e-34 AT4G12410 149 / 1e-46 SAUR-like auxin-responsive protein family (.1) Potri.001G119900 [exp] 110 / 7e-31 AT4G12410 140 / 8e-43 SAUR-like auxin-responsive protein family (.1) Potri.014G066900 [exp] 100 / 7e-27 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.002G145300 [exp] 99 / 2e-26 AT3G60690 174 / 4e-56 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 75 / 8e-18 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 73 / 7e-17 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 68 / 4e-15 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 68 / 7e-15 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 65 / 6e-14 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.009G126400 [exp] 62 / 5e-13 AT5G18020 119 / 1e-36 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10024600 pacid=23161507 polypeptide=Lus10024600 locus=Lus10024600.g ID=Lus10024600.BGIv1.0 annot-version=v1.0 ATGAAAACAGAGAACTCAGCTTCAATCAAGAAGATGAGAGGAATCAAGCTCCACCGTAAATTCACCACAGTCTTCAAGTGGGCAATCCGACGGCCAAAAT CCCGATCATCCATCACCAACCCGATCTCCACAATCACCTCCTTTATCCGGATCCTCCACCACAAGGCCAAGACGGCAATCTCACCCTCCTCCTCCTCGAC AAACTGCATCGAGCTGGGTCGGGTCAGGAAAACCGACGAGAAGGTTTCGTCGCCGAAGAAGGGCCACTTGGCGGTGTACGTCGGTGAACCAGAAGACGAG GCGAGGCAGGTCATGGTTCCGTTGATTTACTTCAACCATCCTCTGTTTGGGGAGCTTCTGGAGGAGGCGGAGCGGGTCTACGGGTTCGACCATCCGGGTC GGATAAGTATTCCATGCGGGTATTCGAAGTTCGAGAAGGTGAAGATGCGGATCGATGCTTGGGATGGTGGGTTCTGTGGCCGCCGCCGGCGGGTGTTTTT CCGGCCGAGCGGTGGGTTAGTTAGATGA
AA sequence Show only first row Show all	>Lus10024600 pacid=23161507 polypeptide=Lus10024600 locus=Lus10024600.g ID=Lus10024600.BGIv1.0 annot-version=v1.0 MKTENSASIKKMRGIKLHRKFTTVFKWAIRRPKSRSSITNPISTITSFIRILHHKAKTAISPSSSSTNCIELGRVRKTDEKVSSPKKGHLAVYVGEPEDE ARQVMVPLIYFNHPLFGELLEEAERVYGFDHPGRISIPCGYSKFEKVKMRIDAWDGGFCGRRRRVFFRPSGGLVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	0	1
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	1.0	0.9390
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	2.6	0.8876
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	3.2	0.8779
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	3.9	0.8956
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	6.9	0.8954
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004177 [exp]	6.9	0.8729
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	10.1	0.8997
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	11.2	0.8452
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	12.0	0.8880
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	14.1	0.7952

Compare expression of checked genes

Lus10024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.