Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12250 327 / 8e-113 Pentapeptide repeat-containing protein (.1.2) AT5G53490 57 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G44920 55 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G55000 46 / 2e-05 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032239 [exp] 510 / 0 AT1G12250 357 / 9e-125 Pentapeptide repeat-containing protein (.1.2) Lus10007788 [exp] 66 / 1e-12 AT5G53490 301 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10000520 [exp] 61 / 1e-10 AT2G44920 286 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002712 [exp] 58 / 8e-10 AT2G44920 287 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002622 [exp] 54 / 5e-08 AT5G55000 462 / 1e-165 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10020270 [exp] 46 / 2e-05 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112900 [exp] 348 / 2e-121 AT1G12250 363 / 1e-128 Pentapeptide repeat-containing protein (.1.2) Potri.008G058800 [exp] 64 / 8e-12 AT2G44920 253 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G200000 [exp] 61 / 5e-11 AT2G44920 256 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G018100 [exp] 50 / 6e-07 AT5G53490 318 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.013G062500 [exp] 49 / 1e-06 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.019G038400 [exp] 48 / 3e-06 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0505 [flax] [poplar] Pentapeptide PF00805 [flax] [poplar] Pentapeptide Pentapeptide repeats (8 copies)
Representative CDS sequence Show only first row Show all	>Lus10024602 pacid=23161571 polypeptide=Lus10024602 locus=Lus10024602.g ID=Lus10024602.BGIv1.0 annot-version=v1.0 ATGGCGTTCACATCAATCTCCACACTACTACCCATGAACTCAATTAACATCTCAATTCCATTCCCCAAGTCTCCACAGCGCCACAGGTTTCAGTTGTCAG CTACAACAGCAAGACACCAAGAAGAAGAACAATTTCACAAGTTTTTGCTTGAAAAGGTAGGTTGTTCTTCTGGGAATGGAAAGTCCCAGAACTGGAAATC AATGGTTTCTGCAGCAATGGCAGCTGCTACTGTTATCAGCTATGGCAGTTTCCAGGTGGCTCCTGTTGTTGCTGAGCTCAACAAGTATGAAGCCGCCACT CGTGGCGAGTTCGGTATCGGATCAGCTGCTCAGTTCGGTTCTGCAGATCTCAGGAAAGCAGTTCATGTGAATGAGAACTTCAGGAGGGCCAATTTCACAT CAGCTGATATGAGGGAATCAGATTTCAGTGGCTCAACATTCAATGGAGCATACATGGAGAAAGCAGTTGCTTACAAGGCCAATTTCACAGGAGCTGATTT AAGCGACACGTTGATGGATCGAATGGTTTTGAACGAAGCCAACCTGAAAGATGCGGTTCTGGTTCGATCGGTACTTACTCGAAGCGATCTGGGTGGCGCC ATCATTGATGGTGCCGATTTCAGCGATGCTGTTCTTGATCTCTCCCAGAAGCAGGCACTTTGCAAGTATGCAAGTGGGAAGAATCCAGCGACAGGGGTGG ACACCAGAGTGAGCTTAGGGTGTGGCAACAAGAAGAGGAATGCTTATGGATCCCCATCTTCTCCTTTGTTGAGTGCTCCTCCTCCTAAGATGCTCGATCG GGACGGCTTCTGCGATGAATCGTCTGGTCTTTGTGATGCTAAGTTAGATTAA
AA sequence Show only first row Show all	>Lus10024602 pacid=23161571 polypeptide=Lus10024602 locus=Lus10024602.g ID=Lus10024602.BGIv1.0 annot-version=v1.0 MAFTSISTLLPMNSINISIPFPKSPQRHRFQLSATTARHQEEEQFHKFLLEKVGCSSGNGKSQNWKSMVSAAMAAATVISYGSFQVAPVVAELNKYEAAT RGEFGIGSAAQFGSADLRKAVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAYKANFTGADLSDTLMDRMVLNEANLKDAVLVRSVLTRSDLGGA IIDGADFSDAVLDLSQKQALCKYASGKNPATGVDTRVSLGCGNKKRNAYGSPSSPLLSAPPPKMLDRDGFCDESSGLCDAKLD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	0	1
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	1.0	0.9607
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	3.5	0.9564
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	3.9	0.9446
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	3.9	0.9526
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	4.0	0.9389
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	4.5	0.9516
AT2G03420			unknown protein		Lus10036810 [exp]	4.9	0.9435
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	6.9	0.9158
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003304 [exp]	9.5	0.9370
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	11.0	0.9098

Compare expression of checked genes

Lus10024602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.